Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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12 + -0.8
12 + +1.8
15 + +0.5
16 + +2.1
18 + -0.3
22 + +1.7
25 + -1.6
57 - -0.3
61 - -1.5
62 + -1.3
62 + +0.7
66 + +1.5
72 + +1.2
72 + +0.3
72 + +0.6
75 + +0.2
78 - +0.6
105 + +0.7
110 - -0.1
114 + +0.3
115 + +1.0
118 + +0.3
122 + -0.2
122 - -0.1
124 + +1.6
135 + +0.7
147 + +2.9
157 + +1.2
161 + +0.0
168 + +0.4
174 + +0.4
177 - -0.2
228 + -0.5
247 + -0.6
252 - -0.0
253 - +0.8
255 + +2.1
258 + -0.1
264 - +1.0
269 + +0.6
269 - +0.1
274 + -0.4
275 - +0.9
277 + -1.2
280 + +2.2
280 + -0.8
283 - +1.3
285 - -1.1
287 + +0.9
287 + +0.3
288 + +0.4
292 - +0.2
293 + +0.4
298 + -0.1
305 - +0.5
314 + +1.5
320 + +1.3
368 + +0.9
370 - -0.8
372 + -0.3
382 + +2.6
384 + -0.4
391 + +0.1
391 - +0.9
397 + +1.9
397 - +0.7
402 + -0.1
405 + +0.1
423 - +2.1
430 + +2.7
440 + +2.0
446 + +3.0
470 + +0.8
524 + +1.3
532 + -0.9
545 - -0.3
557 + -0.0
569 + -0.1
570 - -0.6
583 + +0.4
584 + +0.6
603 - +0.5
603 + +0.5
634 - 11537 mRNA_3169 0.11 +0.5
636 + 11537 mRNA_3169 0.11 -0.4
646 + 11537 mRNA_3169 0.12 +1.0
661 + 11537 mRNA_3169 0.13 +1.0
667 + 11537 mRNA_3169 0.14 +1.3
698 + 11537 mRNA_3169 0.17 +0.6
704 - 11537 mRNA_3169 0.18 +0.6
705 - 11537 mRNA_3169 0.18 +1.9
721 - 11537 mRNA_3169 0.19 -0.3
725 + 11537 mRNA_3169 0.20 +1.4
738 - 11537 mRNA_3169 0.21 -0.1
849 + 11537 mRNA_3169 0.32 +0.2
871 + 11537 mRNA_3169 0.34 -0.7
883 + 11537 mRNA_3169 0.35 +0.0
894 + 11537 mRNA_3169 0.37 +0.4
895 + 11537 mRNA_3169 0.37 +0.8
922 + 11537 mRNA_3169 0.39 -0.2
965 - 11537 mRNA_3169 0.44 -0.7
1,012 - 11537 mRNA_3169 0.48 +0.8
1,026 + 11537 mRNA_3169 0.50 +1.9
1,026 + 11537 mRNA_3169 0.50 +1.1
1,105 + 11537 mRNA_3169 0.58 -0.9
1,123 + 11537 mRNA_3169 0.60 -0.9
1,141 + 11537 mRNA_3169 0.61 -0.3
1,142 + 11537 mRNA_3169 0.61 +1.0
1,165 + 11537 mRNA_3169 0.64 +0.4
1,174 - 11537 mRNA_3169 0.65 +0.7
1,174 + 11537 mRNA_3169 0.65 -0.2
1,259 + 11537 mRNA_3169 0.73 +0.2
1,265 + 11537 mRNA_3169 0.74 -0.3
1,268 + 11537 mRNA_3169 0.74 +1.3
1,269 - 11537 mRNA_3169 0.74 +0.5
1,288 - 11537 mRNA_3169 0.76 -0.4
1,297 + 11537 mRNA_3169 0.77 -1.0
1,303 - 11537 mRNA_3169 0.78 -0.2
1,399 + 11537 mRNA_3169 0.87 +0.6
1,412 - 11537 mRNA_3169 0.88 -0.3
1,419 - 11537 mRNA_3169 0.89 -0.3
1,423 - 11537 mRNA_3169 0.90 -4.4
1,429 - +1.8
1,453 + +0.3
1,459 + +0.3
1,459 + -0.8
1,460 - +0.1
1,461 + +0.1
1,462 + +0.0
1,467 + -0.1
1,470 - +0.5
1,474 - +0.0
1,485 + -0.8
1,520 + -2.1
1,523 + +1.3
1,531 - -0.8
1,537 + -0.1
1,541 + -1.7
1,562 + +0.7
1,567 + -0.5
1,572 + -1.5
1,582 - -0.6
1,584 - -0.1
1,589 + -0.3
1,596 - +0.8
1,601 - +0.1
1,602 + -0.7
1,605 + -2.4
1,609 + -1.1
1,616 + +0.3
1,636 + +1.1
1,654 + -0.3
1,656 - -1.1
1,666 + +0.1
1,675 - -0.4
1,682 - -2.3
1,697 - -0.2
1,709 + +2.2
1,709 - +1.8
1,711 + +1.1
1,718 - -0.2
1,719 + -0.5
1,722 - +0.7
1,723 + +0.4
1,725 - -0.9
1,725 - -0.1
1,727 + -1.0
1,730 + -0.3
1,731 + +1.5
1,732 + +0.7
1,732 + +0.6
1,734 + -0.3
1,734 + +0.6
1,734 + +1.3
1,739 - +0.0
1,740 + +0.1
1,744 - +1.3
1,747 + -0.1
1,749 + +0.9
1,759 + -1.0
1,759 + -0.8
1,759 + +0.5
1,761 + +0.8
1,763 + +2.3
1,765 + +0.0
1,767 + +1.7
1,769 + +1.1
1,772 + +1.6
1,772 + -0.2
1,774 + +1.1
1,774 + +0.2
1,775 + +1.3
1,776 - +1.1
1,776 + -0.8
1,777 + -0.1
1,778 + +0.5
1,778 - -0.1
1,781 - +0.6
1,783 - +1.7
1,783 - -0.2
1,783 - +1.2
1,783 - +0.6
1,784 + -0.6
1,789 + -0.1
1,789 - -0.4
1,791 + +0.3
1,792 + +0.1
1,793 + +0.3
1,795 + -0.5
1,796 + -0.9
1,796 - -0.3
1,798 + +1.1
1,800 + -0.3
1,801 + +0.7
1,805 + -0.4
1,805 + -2.6
1,807 + +0.0
1,813 - +0.3
1,814 + -0.5
1,814 + +1.0
1,818 - -0.3
1,851 - -0.9
1,874 + +0.4
1,881 - -0.3
1,885 - -0.1
1,891 - -1.0
1,896 - +0.9
1,912 + +1.0
1,912 + -0.4
1,914 - -0.1
1,916 - -0.7
1,917 - -0.4
1,919 + -0.8
1,922 - +0.8
1,923 - +0.2
1,934 - +0.4
1,935 + +0.8
1,938 - +0.3
1,938 - -0.4
1,940 - +0.1
1,941 + +0.1
1,941 + +1.2
1,942 + -0.6
1,943 - -0.2
1,944 + +1.0
1,944 - +1.2
1,945 - -1.3
1,945 + +0.4
1,946 - -0.3
1,947 + +0.7
1,960 - -0.6
1,968 + +0.1
1,980 + +0.4
2,015 + +1.2
2,067 - +0.0
2,081 - +3.0
2,091 + -2.2
2,220 + +0.1
2,229 - -0.8
2,235 - -1.6
2,237 - -1.2
2,242 + +1.3
2,242 - -0.3
2,245 - +1.0
2,248 - -0.4
2,251 + +1.5
2,254 - -0.2
2,261 + +0.4
2,262 - +1.8
2,266 + +0.1
2,268 + +0.5
2,400 + 11538 mRNA_3170 0.21 -0.3
2,401 - 11538 mRNA_3170 0.21 +0.2
2,404 + 11538 mRNA_3170 0.22 +0.0
2,414 + 11538 mRNA_3170 0.23 -0.9
2,420 - 11538 mRNA_3170 0.23 +0.4
2,439 + 11538 mRNA_3170 0.25 -0.5
2,446 + 11538 mRNA_3170 0.26 -0.0
2,470 - 11538 mRNA_3170 0.28 +0.4
2,516 - 11538 mRNA_3170 0.32 -1.7

Or see this region's nucleotide sequence