Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3219

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11587 and 11588 are separated by 192 nucleotides mRNA_3219: 11587 - HMMPfam-RNase H-PF00075,ProSiteProfiles-RNase H domain profile.-PS50879,SUPERFAMILY--SSF53098, at 125,577 to 131,824 11587 mRNA_3220: 11588 - KOG0686 COP9 signalosome, subunit CSN1, at 132,017 to 133,130 11588

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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125,673 + +2.6
125,824 - +0.5
125,836 - +1.1
125,972 - +1.8
126,004 + -0.0
126,140 + -0.1
126,148 - -0.7
126,150 - +1.0
126,153 - +0.2
126,160 - +0.7
126,172 - -1.4
126,280 + 11587 mRNA_3219 0.11 +0.3
126,306 - 11587 mRNA_3219 0.12 +0.2
126,484 + 11587 mRNA_3219 0.15 +0.5
126,492 + 11587 mRNA_3219 0.15 -0.8
126,510 + 11587 mRNA_3219 0.15 +0.0
126,602 + 11587 mRNA_3219 0.16 +0.5
127,343 + 11587 mRNA_3219 0.28 -0.3
127,504 - 11587 mRNA_3219 0.31 +0.9
127,528 - 11587 mRNA_3219 0.31 +0.7
127,528 - 11587 mRNA_3219 0.31 -0.9
127,528 + 11587 mRNA_3219 0.31 -0.7
127,533 + 11587 mRNA_3219 0.31 +1.0
127,539 - 11587 mRNA_3219 0.31 +0.7
127,554 + 11587 mRNA_3219 0.32 -1.4
127,567 + 11587 mRNA_3219 0.32 +0.9
127,570 + 11587 mRNA_3219 0.32 -0.0
127,580 + 11587 mRNA_3219 0.32 +1.1
127,585 + 11587 mRNA_3219 0.32 -0.1
127,588 - 11587 mRNA_3219 0.32 +0.1
127,608 + 11587 mRNA_3219 0.33 -1.5
127,617 + 11587 mRNA_3219 0.33 -1.1
127,703 + 11587 mRNA_3219 0.34 +0.9
127,711 + 11587 mRNA_3219 0.34 +0.0
127,715 + 11587 mRNA_3219 0.34 +0.3
127,748 + 11587 mRNA_3219 0.35 +0.3
127,880 - 11587 mRNA_3219 0.37 +2.5
127,911 - 11587 mRNA_3219 0.37 +1.4
128,006 + 11587 mRNA_3219 0.39 +0.8
128,026 - 11587 mRNA_3219 0.39 -0.5
128,038 + 11587 mRNA_3219 0.39 +1.3
128,149 - 11587 mRNA_3219 0.41 -0.5
128,173 + 11587 mRNA_3219 0.42 +0.8
128,693 - 11587 mRNA_3219 0.50 +1.3
128,722 + 11587 mRNA_3219 0.50 +0.3
128,988 + 11587 mRNA_3219 0.55 +0.2
129,000 + 11587 mRNA_3219 0.55 +0.4
129,005 + 11587 mRNA_3219 0.55 -0.4
129,265 - 11587 mRNA_3219 0.59 +0.2
129,563 + 11587 mRNA_3219 0.64 +1.0
129,591 - 11587 mRNA_3219 0.64 +1.5
130,455 - 11587 mRNA_3219 0.78 -0.1
130,458 - 11587 mRNA_3219 0.78 +1.3
130,972 + 11587 mRNA_3219 0.86 +0.2
131,128 - 11587 mRNA_3219 0.89 +0.1
131,459 - +1.1
131,602 - +0.6
131,964 + -0.5
132,026 - +0.6
132,346 - 11588 mRNA_3220 0.30 -0.6
132,384 - 11588 mRNA_3220 0.33 +0.3
132,395 - 11588 mRNA_3220 0.34 -0.3

Or see this region's nucleotide sequence