Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3226

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11593 and 11594 are separated by 232 nucleotides mRNA_3225: 11593 - KOG0951 RNA helicase BRR2, DEAD-box superfamily, at 139,733 to 140,179 11593 mRNA_3226: 11594 - K05535 MNN2 alpha 1,2-mannosyltransferase, at 140,412 to 142,107 11594

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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139,532 - -1.3
139,543 + +2.1
139,641 - +0.0
139,693 + +1.7
140,078 - 11593 mRNA_3225 0.77 -1.3
140,085 + 11593 mRNA_3225 0.79 -0.7
140,092 + 11593 mRNA_3225 0.80 +0.2
140,093 - 11593 mRNA_3225 0.81 +1.9
140,095 - 11593 mRNA_3225 0.81 +0.6
140,110 + 11593 mRNA_3225 0.84 +0.0
140,180 - +0.8
140,191 + -0.6
140,226 - -1.5
140,300 - +0.9
140,303 - +0.4
140,311 + +0.8
140,400 + +0.3
140,444 - +0.3
140,450 + +0.4
140,584 + 11594 mRNA_3226 0.10 +0.8
140,790 + 11594 mRNA_3226 0.22 +0.6
140,846 + 11594 mRNA_3226 0.26 +0.4
141,117 + 11594 mRNA_3226 0.42 -0.8
141,164 + 11594 mRNA_3226 0.44 +0.1
141,288 - 11594 mRNA_3226 0.52 +1.5
141,634 - 11594 mRNA_3226 0.72 +0.5
141,742 + 11594 mRNA_3226 0.78 +0.1
141,747 - 11594 mRNA_3226 0.79 +0.7
141,761 - 11594 mRNA_3226 0.80 +0.3
142,053 - -0.5
142,331 + -0.5
142,333 - -1.1
142,628 + -1.5
142,774 + -0.2
142,776 - +0.3
142,781 + -0.1
142,793 - +0.0
142,809 + +0.5
142,833 + +0.2
142,950 - -1.1

Or see this region's nucleotide sequence