Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3244

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11611 and 11612 are separated by 849 nucleotides11612 and 11613 are separated by 459 nucleotides mRNA_3243: 11611 - K10752 RBBP4, HAT2, CAF1, MIS16 histone-binding protein RBBP4, at 196,612 to 198,456 11611 mRNA_3244: 11612 - Hypothetical Protein, at 199,306 to 200,606 11612 mRNA_3245: 11613 - HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550,HMMPfam-Protein of unknown function (DUF3295)-PF11702, at 201,066 to 204,037 11613

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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198,330 - +0.2
198,422 + +0.9
198,901 - -0.2
199,024 + -0.3
199,061 + -1.3
199,075 + -0.2
199,079 - +0.2
199,237 - -0.9
199,405 - +0.3
199,521 + 11612 mRNA_3244 0.17 +0.1
200,108 + 11612 mRNA_3244 0.62 +1.5
200,206 + 11612 mRNA_3244 0.69 -1.2
200,479 + +2.9
200,500 - +0.6
200,515 - +1.1
200,553 - +0.4
200,597 + +0.2
201,006 - -1.5
201,130 - -0.3

Or see this region's nucleotide sequence