Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3294

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11661 and 11662 are separated by 13 nucleotides11662 and 11663 are separated by 107 nucleotides mRNA_3293: 11661 - K01440 PNC1 nicotinamidase, at 318,203 to 319,692 11661 mRNA_3294: 11662 - K20368 CNIH, ERV14 protein cornichon, at 319,706 to 321,575 11662 mRNA_3295: 11663 - K14324 SAP18 histone deacetylase complex subunit SAP18, at 321,683 to 322,724 11663

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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318,773 + 11661 mRNA_3293 0.38 +2.6
318,774 + 11661 mRNA_3293 0.38 +2.7
319,142 - 11661 mRNA_3293 0.63 +0.4
319,157 + 11661 mRNA_3293 0.64 +0.4
319,309 + 11661 mRNA_3293 0.74 +0.6
319,322 - 11661 mRNA_3293 0.75 +0.3
319,333 + 11661 mRNA_3293 0.76 +0.0
319,334 + 11661 mRNA_3293 0.76 +1.4
319,853 + +0.6
321,612 - +0.4
321,616 + +0.7
321,623 + -0.6
321,626 - -0.3
321,632 - -1.3
321,636 + -0.2
321,647 + -0.4
321,659 + -0.6
321,767 + +1.0
321,782 + +0.6
321,800 + 11663 mRNA_3295 0.11 +2.0
321,801 + 11663 mRNA_3295 0.11 -1.1
321,801 + 11663 mRNA_3295 0.11 -0.4
321,816 + 11663 mRNA_3295 0.13 -0.2
321,818 - 11663 mRNA_3295 0.13 -0.3
321,906 - 11663 mRNA_3295 0.21 +0.6
322,208 - 11663 mRNA_3295 0.50 +0.3
322,360 - 11663 mRNA_3295 0.65 -0.1

Or see this region's nucleotide sequence