Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3352

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11719 and 11720 are separated by 404 nucleotides11720 and 11721 are separated by 294 nucleotides mRNA_3351: 11719 - K12196 VPS4 vacuolar protein-sorting-associated protein 4, at 461,320 to 463,748 11719 mRNA_3352: 11720 - K06699 PSME4 proteasome activator subunit 4, at 464,153 to 471,579 11720 mRNA_3353: 11721 - K10352 MYH myosin heavy chain, at 471,874 to 478,185 11721

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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463,440 - 11719 mRNA_3351 0.87 +0.7
463,801 + +1.0
463,890 - +1.5
463,919 - -1.0
463,953 + +0.6
464,075 - -0.7
464,075 - +1.1
464,083 - +0.2
464,083 - +0.7
464,085 + +0.9
464,089 - +1.0
464,118 + +0.7
464,143 + -0.7
464,221 + -0.2
464,224 - +0.4
464,232 - +0.3
464,237 - -0.0
464,271 + -0.2
464,352 - -0.8
464,352 - +0.8
464,358 + +1.0
464,373 - +3.2
464,388 + +0.6
464,394 + +0.4
464,395 - -1.6
464,517 - -0.1
464,519 + -0.6
464,651 + -0.1
464,791 + +1.0
464,797 + +0.2
464,814 - +0.5
465,065 + 11720 mRNA_3352 0.12 +0.1
465,261 + 11720 mRNA_3352 0.15 -0.0
465,262 - 11720 mRNA_3352 0.15 +0.7
465,369 + 11720 mRNA_3352 0.16 +1.1
465,431 + 11720 mRNA_3352 0.17 -1.1
465,468 - 11720 mRNA_3352 0.18 +1.5
465,524 + 11720 mRNA_3352 0.18 +0.2
465,638 - 11720 mRNA_3352 0.20 -0.2
465,781 + 11720 mRNA_3352 0.22 +0.0
465,884 + 11720 mRNA_3352 0.23 +1.1
465,966 + 11720 mRNA_3352 0.24 +2.1
466,085 + 11720 mRNA_3352 0.26 +0.4
466,290 - 11720 mRNA_3352 0.29 -0.4
466,374 + 11720 mRNA_3352 0.30 -0.2
466,537 - 11720 mRNA_3352 0.32 -0.0
466,543 - 11720 mRNA_3352 0.32 +0.5
466,657 - 11720 mRNA_3352 0.34 +0.4
466,659 + 11720 mRNA_3352 0.34 -1.3
466,661 + 11720 mRNA_3352 0.34 -0.4
466,700 + 11720 mRNA_3352 0.34 +1.7
466,751 - 11720 mRNA_3352 0.35 +0.4
466,766 + 11720 mRNA_3352 0.35 +0.5
466,788 - 11720 mRNA_3352 0.35 -1.9
466,880 - 11720 mRNA_3352 0.37 +0.0
466,888 - 11720 mRNA_3352 0.37 +1.0
466,909 - 11720 mRNA_3352 0.37 +1.0
466,970 + 11720 mRNA_3352 0.38 +0.6
466,980 - 11720 mRNA_3352 0.38 +3.2
467,006 + 11720 mRNA_3352 0.38 -1.0
467,018 + 11720 mRNA_3352 0.39 -0.4
467,054 + 11720 mRNA_3352 0.39 -0.8
467,120 + 11720 mRNA_3352 0.40 -0.2
467,127 + 11720 mRNA_3352 0.40 +1.0
467,192 + 11720 mRNA_3352 0.41 +1.1
467,256 + 11720 mRNA_3352 0.42 -1.6
467,352 + 11720 mRNA_3352 0.43 -0.3
467,352 + 11720 mRNA_3352 0.43 +1.5
467,372 + 11720 mRNA_3352 0.43 +0.3
467,504 + 11720 mRNA_3352 0.45 -0.3
467,522 + 11720 mRNA_3352 0.45 +0.6
467,527 - 11720 mRNA_3352 0.45 +0.5
467,529 + 11720 mRNA_3352 0.45 +0.7
467,534 + 11720 mRNA_3352 0.46 -0.3
468,081 + 11720 mRNA_3352 0.53 -1.5
468,084 - 11720 mRNA_3352 0.53 -0.2
468,144 + 11720 mRNA_3352 0.54 +2.1
468,195 - 11720 mRNA_3352 0.54 -0.8
468,196 + 11720 mRNA_3352 0.54 +0.4
468,425 - 11720 mRNA_3352 0.58 +0.7
468,442 + 11720 mRNA_3352 0.58 +0.4
468,575 + 11720 mRNA_3352 0.60 +2.0
468,602 - 11720 mRNA_3352 0.60 +0.9
468,646 - 11720 mRNA_3352 0.60 +0.8
468,670 - 11720 mRNA_3352 0.61 +1.7
468,719 + 11720 mRNA_3352 0.61 -0.4
468,768 - 11720 mRNA_3352 0.62 +0.1
468,769 + 11720 mRNA_3352 0.62 +0.4
468,770 + 11720 mRNA_3352 0.62 +0.6
468,785 - 11720 mRNA_3352 0.62 +0.0
468,897 - 11720 mRNA_3352 0.64 -0.7
469,026 + 11720 mRNA_3352 0.66 +0.8
469,027 - 11720 mRNA_3352 0.66 +0.1
469,036 + 11720 mRNA_3352 0.66 +0.2
469,086 + 11720 mRNA_3352 0.66 +0.7
469,101 + 11720 mRNA_3352 0.67 +0.1
469,268 - 11720 mRNA_3352 0.69 +1.1
469,401 + 11720 mRNA_3352 0.71 +1.1
469,457 + 11720 mRNA_3352 0.71 +0.0
469,572 + 11720 mRNA_3352 0.73 +0.2
469,611 - 11720 mRNA_3352 0.73 +1.3
469,680 - 11720 mRNA_3352 0.74 +0.2
469,701 + 11720 mRNA_3352 0.75 -0.8
469,733 + 11720 mRNA_3352 0.75 +0.0
469,735 - 11720 mRNA_3352 0.75 -2.1
469,738 - 11720 mRNA_3352 0.75 -0.4
469,741 + 11720 mRNA_3352 0.75 -1.1
469,748 - 11720 mRNA_3352 0.75 +0.7
469,843 - 11720 mRNA_3352 0.77 +0.2
469,854 - 11720 mRNA_3352 0.77 +0.8
469,929 + 11720 mRNA_3352 0.78 -0.8
470,038 + 11720 mRNA_3352 0.79 +0.4
470,080 - 11720 mRNA_3352 0.80 +0.0
470,126 - 11720 mRNA_3352 0.80 -0.7
470,130 - 11720 mRNA_3352 0.80 +1.0
470,160 - 11720 mRNA_3352 0.81 +0.2
470,161 + 11720 mRNA_3352 0.81 +1.2
470,161 + 11720 mRNA_3352 0.81 -0.3
470,164 - 11720 mRNA_3352 0.81 +1.1
470,285 - 11720 mRNA_3352 0.83 +0.3
470,300 - 11720 mRNA_3352 0.83 +1.0
470,313 - 11720 mRNA_3352 0.83 +0.2
470,425 - 11720 mRNA_3352 0.84 -0.3
470,452 - 11720 mRNA_3352 0.85 +0.5
470,455 + 11720 mRNA_3352 0.85 -0.7
470,488 + 11720 mRNA_3352 0.85 -0.0
470,673 - 11720 mRNA_3352 0.88 +0.2
470,694 + 11720 mRNA_3352 0.88 +0.1
470,734 + 11720 mRNA_3352 0.89 +1.6
470,758 - 11720 mRNA_3352 0.89 -0.2
471,049 + +0.1
471,049 + -1.1
471,346 + +1.1
471,462 + +0.8
471,477 + +0.4
471,570 - +0.5
471,605 + +2.0
471,625 - +2.6
471,747 - +1.4
472,059 + +1.0

Or see this region's nucleotide sequence