Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3479

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11846 and 11847 are separated by 160 nucleotides11847 and 11848 are separated by 196 nucleotides mRNA_3478: 11846 - SUPERFAMILY--SSF56112, at 204,722 to 206,830 11846 mRNA_3479: 11847 - SUPERFAMILY--SSF46934, at 206,991 to 209,346 11847 mRNA_3480: 11848 - K02180 BUB3 cell cycle arrest protein BUB3, at 209,543 to 211,018 11848

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
206,072 + 11846 mRNA_3478 0.64 +0.6
206,076 + 11846 mRNA_3478 0.64 -0.7
206,385 - 11846 mRNA_3478 0.79 +1.0
206,599 + 11846 mRNA_3478 0.89 +0.6
206,601 + 11846 mRNA_3478 0.89 -1.1
206,641 + -0.5
206,774 - +0.2
206,814 - -0.9
206,856 + +1.0
206,896 - -0.8
206,899 - -0.6
206,914 - -0.1
206,915 - +0.1
206,916 + +0.6
206,924 + -0.1
206,939 + -0.9
207,042 - +0.8
207,049 - +0.2
207,052 + +1.4
207,067 + +0.4
207,205 - -2.1
207,358 - 11847 mRNA_3479 0.16 -0.9
207,360 + 11847 mRNA_3479 0.16 +0.6
207,735 - 11847 mRNA_3479 0.32 +1.2
207,762 - 11847 mRNA_3479 0.33 +0.3
207,789 - 11847 mRNA_3479 0.34 +0.2
207,904 - 11847 mRNA_3479 0.39 +2.7
208,064 - 11847 mRNA_3479 0.46 +0.5
208,353 + 11847 mRNA_3479 0.58 -0.3
208,360 + 11847 mRNA_3479 0.58 -0.6
208,508 + 11847 mRNA_3479 0.64 +0.0
208,552 + 11847 mRNA_3479 0.66 +0.1
208,934 + 11847 mRNA_3479 0.82 +0.5
209,085 + 11847 mRNA_3479 0.89 +1.8
209,370 + +0.1
209,374 + +0.5
209,495 + -1.0
209,524 + +0.0

Or see this region's nucleotide sequence