Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3482

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11849 and 11850 are separated by 354 nucleotides11850 and 11851 are separated by 117 nucleotides11851 and 11852 are separated by 406 nucleotides mRNA_3481: 11849 - K01752 E4.3.1.17, sdaA, sdaB, tdcG L-serine dehydratase, at 211,233 to 213,567 11849 mRNA_3482: 11850 - K03861 PIGP, GPI19, DSCR5 phosphatidylinositol glycan, class P, at 213,922 to 215,101 11850 mRNA_3483: 11851 - KOG0683 Glutamine synthetase, at 215,219 to 215,380 11851 mRNA_3484: 11852 - Hypothetical Protein, at 215,787 to 216,323 11852

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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212,965 - 11849 mRNA_3481 0.74 +1.0
212,974 - 11849 mRNA_3481 0.75 +0.2
212,982 + 11849 mRNA_3481 0.75 +0.6
213,165 + 11849 mRNA_3481 0.83 +1.0
213,474 + +0.4
213,487 + +0.7
213,607 - +1.0
213,613 + -0.0
213,742 + -1.0
213,752 - -0.5
213,757 - +0.3
213,758 - +0.3
213,765 - +0.2
213,783 + +1.3
213,816 + +0.6
213,837 + -0.2
213,872 - -0.8
213,895 - -0.6
213,959 - +0.6
214,083 + 11850 mRNA_3482 0.14 +0.9
214,960 + 11850 mRNA_3482 0.88 -0.1
215,119 + +1.6
215,244 - 11851 mRNA_3483 0.15 +0.3
215,558 + +0.8
215,889 - 11852 mRNA_3484 0.19 -0.5
215,990 + 11852 mRNA_3484 0.38 -0.1

Or see this region's nucleotide sequence