Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3863

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12230 and 12231 are separated by 501 nucleotides12231 and 12232 are separated by 305 nucleotides mRNA_3862: 12230 - SUPERFAMILY--SSF52047, at 767,659 to 769,319 12230 mRNA_3863: 12231 - KOG1434 Meiotic recombination protein Dmc1, at 769,821 to 771,118 12231 mRNA_3864: 12232 - K08737 MSH6 DNA mismatch repair protein MSH6, at 771,424 to 775,679 12232

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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768,894 - 12230 mRNA_3862 0.74 +1.0
768,916 - 12230 mRNA_3862 0.76 -0.1
769,102 - 12230 mRNA_3862 0.87 +2.0
769,234 - +0.9
769,310 + +2.9
769,409 - -0.0
769,419 + +1.2
769,468 - +0.5
769,862 - +1.6
769,868 + +0.3
769,909 + +2.0
770,795 - 12231 mRNA_3863 0.75 +0.2
770,994 - +0.6
771,394 - -0.8
771,430 + +0.1
771,542 + +0.7
771,549 - +2.4
771,550 - +0.7
771,602 + -0.2
771,616 + +0.1
771,720 - +0.6
771,862 + 12232 mRNA_3864 0.10 -0.9
772,017 + 12232 mRNA_3864 0.14 +0.4

Or see this region's nucleotide sequence