Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3950

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12317 and 12318 are separated by 360 nucleotides12318 and 12319 are separated by 979 nucleotides mRNA_3949: 12317 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 974,952 to 977,086 12317 mRNA_3950: 12318 - K03456 PPP2R1 serine/threonine-protein phosphatase 2A regulatory subunit A, at 977,447 to 979,479 12318 mRNA_3951: 12319 - K02967 RP-S2, MRPS2, rpsB small subunit ribosomal protein S2, at 980,459 to 981,716 12319

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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977,058 - -0.1
977,122 - +1.8
977,180 + -0.2
979,505 + +1.0
979,522 - +1.0
979,528 + +0.1
979,535 - -0.1
979,537 - -0.5
979,659 + +0.6
979,667 - +0.4
979,668 - +0.4
979,689 - +2.1
979,692 + +0.8
979,964 + -1.6
979,965 + +0.5
979,969 - -0.4
980,136 - +0.4
980,156 - +1.2
980,392 + -0.1
980,393 - -0.6
980,401 - +0.6
980,402 + -0.1
980,402 + +2.9
980,404 - +0.6
980,419 - +0.8
980,419 + -0.2
980,419 - +0.6
980,430 - +0.4
980,433 + +0.8

Or see this region's nucleotide sequence