Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4084

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12452 and 12453 are separated by 328 nucleotides mRNA_4084: 12452 - KOG1674 Cyclin, at 1,322,887 to 1,323,848 12452 mRNA_4085: 12453 - Hypothetical Protein, at 1,324,177 to 1,324,971 12453

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,321,927 - +1.1
1,321,930 - +1.8
1,321,933 + +0.3
1,321,943 + -0.4
1,321,946 - +0.1
1,321,950 + +0.8
1,321,954 + +0.1
1,321,956 - +1.4
1,321,957 - +0.8
1,321,960 + +0.6
1,321,974 - +0.8
1,321,976 + +1.3
1,321,986 + +0.6
1,322,026 - -1.8
1,322,026 - +0.3
1,322,026 - +2.1
1,322,027 + +0.5
1,322,036 - +0.3
1,322,038 - -2.4
1,322,048 + +1.2
1,322,059 - +0.9
1,322,060 + +1.4
1,322,061 - +1.5
1,322,067 + -1.8
1,322,077 - +0.1
1,322,102 - -0.5
1,322,119 - +0.6
1,322,119 + +0.2
1,322,135 + +1.1
1,322,140 - +0.5
1,322,212 - +0.1
1,322,239 - -0.0
1,322,239 - -1.7
1,322,249 + +1.4
1,322,274 - +0.3
1,322,364 + -0.6
1,322,378 - -0.2
1,322,395 + +0.5
1,322,407 - +1.3
1,322,422 - -0.0
1,322,523 - +0.2
1,322,542 + +0.7
1,322,555 + -0.1
1,322,689 - +0.3
1,322,940 - +0.1
1,322,966 + -0.4
1,322,991 - 12452 mRNA_4084 0.11 -0.9
1,323,830 - +3.4
1,323,862 - +2.1
1,323,865 - +0.2
1,323,866 + +0.2
1,323,868 - +2.3
1,323,895 - -0.1
1,323,917 + +0.5
1,323,919 + +0.4
1,323,936 + +1.1
1,323,978 - +0.4
1,324,009 + +1.6
1,324,015 + +0.9
1,324,021 - -0.4
1,324,022 - +1.0
1,324,022 - +1.8
1,324,024 + +1.4
1,324,026 + -0.4
1,324,027 - +0.9
1,324,028 + -0.1
1,324,029 - -0.1
1,324,032 - +1.7
1,324,036 - +0.6
1,324,047 + +0.7
1,324,049 - +1.1
1,324,052 + +1.7
1,324,054 + +0.7
1,324,056 + +0.9
1,324,056 + +0.5
1,324,059 + +0.2
1,324,072 + +0.5
1,324,076 + +2.0
1,324,077 + -0.4
1,324,079 + +0.6
1,324,079 + +1.6
1,324,081 + +1.5
1,324,088 + +1.1
1,324,102 - +0.5
1,324,102 + +0.5
1,324,108 - +2.1
1,324,110 + +0.7
1,324,132 + -0.7
1,324,155 + -0.9
1,324,177 + +0.4
1,324,195 - -0.2
1,324,212 - +1.1
1,324,212 - +0.1
1,324,214 - -0.6
1,324,229 + +1.4
1,324,234 + +0.6
1,324,239 - +0.6
1,324,240 - +0.1
1,324,240 - -1.5
1,324,242 + +0.6
1,324,245 + +0.6
1,324,247 - -1.2
1,324,249 + -0.3
1,324,253 - +1.2
1,324,253 + +0.1
1,324,254 - -0.2
1,324,254 + +0.4
1,324,255 + +1.8
1,324,257 - 12453 mRNA_4085 0.10 +0.1
1,324,258 + 12453 mRNA_4085 0.10 -0.8
1,324,264 + 12453 mRNA_4085 0.11 +1.3
1,324,265 + 12453 mRNA_4085 0.11 +0.4
1,324,267 - 12453 mRNA_4085 0.11 +0.3
1,324,268 + 12453 mRNA_4085 0.11 +1.2
1,324,268 + 12453 mRNA_4085 0.11 -0.1
1,324,268 + 12453 mRNA_4085 0.11 -0.6
1,324,268 + 12453 mRNA_4085 0.11 +1.6
1,324,271 + 12453 mRNA_4085 0.12 -0.4
1,324,272 - 12453 mRNA_4085 0.12 +0.9
1,324,273 + 12453 mRNA_4085 0.12 -0.3
1,324,278 - 12453 mRNA_4085 0.13 -0.1
1,324,279 + 12453 mRNA_4085 0.13 -0.5
1,324,279 - 12453 mRNA_4085 0.13 -0.9
1,324,280 + 12453 mRNA_4085 0.13 +0.1
1,324,281 - 12453 mRNA_4085 0.13 +1.1
1,324,285 + 12453 mRNA_4085 0.14 -0.0
1,324,286 - 12453 mRNA_4085 0.14 -0.1
1,324,286 - 12453 mRNA_4085 0.14 +1.0
1,324,287 + 12453 mRNA_4085 0.14 -0.4
1,324,287 + 12453 mRNA_4085 0.14 +0.3
1,324,287 + 12453 mRNA_4085 0.14 +0.1
1,324,295 + 12453 mRNA_4085 0.15 +0.3
1,324,302 - 12453 mRNA_4085 0.16 -0.1
1,324,302 - 12453 mRNA_4085 0.16 +0.1
1,324,310 + 12453 mRNA_4085 0.17 +0.1
1,324,315 - 12453 mRNA_4085 0.17 +1.8
1,324,318 - 12453 mRNA_4085 0.18 +1.0
1,324,325 - 12453 mRNA_4085 0.19 +0.3
1,324,340 - 12453 mRNA_4085 0.21 +1.3
1,324,358 - 12453 mRNA_4085 0.23 +0.5
1,324,361 + 12453 mRNA_4085 0.23 -0.5
1,324,362 - 12453 mRNA_4085 0.23 +1.9
1,324,368 - 12453 mRNA_4085 0.24 -0.2
1,324,376 + 12453 mRNA_4085 0.25 -0.1
1,324,376 - 12453 mRNA_4085 0.25 +0.3
1,324,380 - 12453 mRNA_4085 0.26 +1.4
1,324,381 + 12453 mRNA_4085 0.26 +0.1
1,324,387 + 12453 mRNA_4085 0.26 -0.3
1,324,388 - 12453 mRNA_4085 0.27 -1.0
1,324,390 + 12453 mRNA_4085 0.27 -0.4
1,324,391 - 12453 mRNA_4085 0.27 +0.1
1,324,392 + 12453 mRNA_4085 0.27 +1.6
1,324,393 + 12453 mRNA_4085 0.27 +0.4
1,324,395 - 12453 mRNA_4085 0.27 +1.6
1,324,395 + 12453 mRNA_4085 0.27 +1.5
1,324,399 - 12453 mRNA_4085 0.28 -0.0
1,324,407 + 12453 mRNA_4085 0.29 +0.5
1,324,417 + 12453 mRNA_4085 0.30 +0.0
1,324,425 + 12453 mRNA_4085 0.31 +0.6
1,324,455 - 12453 mRNA_4085 0.35 +0.6
1,324,468 - 12453 mRNA_4085 0.37 -0.2
1,324,496 + 12453 mRNA_4085 0.40 +0.3
1,324,506 + 12453 mRNA_4085 0.41 -0.2
1,324,547 - 12453 mRNA_4085 0.47 -0.6
1,324,550 - 12453 mRNA_4085 0.47 +0.3
1,324,551 - 12453 mRNA_4085 0.47 +0.7
1,324,551 - 12453 mRNA_4085 0.47 -0.5
1,324,551 - 12453 mRNA_4085 0.47 -0.1
1,324,553 + 12453 mRNA_4085 0.47 +0.6
1,324,554 + 12453 mRNA_4085 0.47 +1.0
1,324,555 - 12453 mRNA_4085 0.48 +1.7
1,324,567 + 12453 mRNA_4085 0.49 +0.4
1,324,567 - 12453 mRNA_4085 0.49 +1.0
1,324,569 + 12453 mRNA_4085 0.49 +0.6
1,324,570 + 12453 mRNA_4085 0.49 -0.2
1,324,570 - 12453 mRNA_4085 0.49 +3.5
1,324,575 + 12453 mRNA_4085 0.50 +0.4
1,324,576 - 12453 mRNA_4085 0.50 +0.3
1,324,579 + 12453 mRNA_4085 0.51 +0.4
1,324,579 - 12453 mRNA_4085 0.51 -1.6
1,324,581 - 12453 mRNA_4085 0.51 +0.4
1,324,587 + 12453 mRNA_4085 0.52 +1.0
1,324,591 - 12453 mRNA_4085 0.52 +2.3
1,324,602 + 12453 mRNA_4085 0.53 -0.1
1,324,610 + 12453 mRNA_4085 0.54 -0.5
1,324,630 - 12453 mRNA_4085 0.57 +2.0
1,324,692 - 12453 mRNA_4085 0.65 -2.1
1,324,693 + 12453 mRNA_4085 0.65 +1.0
1,324,709 - 12453 mRNA_4085 0.67 -1.0
1,324,714 - 12453 mRNA_4085 0.68 -0.3
1,324,724 - 12453 mRNA_4085 0.69 +1.7
1,324,730 - 12453 mRNA_4085 0.70 +0.7
1,324,733 + 12453 mRNA_4085 0.70 -0.9
1,324,738 + 12453 mRNA_4085 0.71 +0.8
1,324,742 - 12453 mRNA_4085 0.71 -0.8
1,324,745 + 12453 mRNA_4085 0.71 -0.4
1,324,760 + 12453 mRNA_4085 0.73 -0.4
1,324,767 + 12453 mRNA_4085 0.74 +0.7
1,324,809 - 12453 mRNA_4085 0.79 +0.5
1,324,840 + 12453 mRNA_4085 0.83 -0.4
1,324,848 + 12453 mRNA_4085 0.84 -0.1

Or see this region's nucleotide sequence