Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4157

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12524 and 12525 are separated by 236 nucleotides12525 and 12526 are separated by 177 nucleotides mRNA_4156: 12524 - KOG1242 Protein containing adaptin N-terminal region, at 1,486,313 to 1,494,426 12524 mRNA_4157: 12525 - KOG2823 Cellular protein (glioma tumor suppressor candidate region gene 2), at 1,494,663 to 1,496,087 12525 mRNA_4158: 12526 - K11319 ING3 inhibitor of growth protein 3, at 1,496,265 to 1,497,748 12526

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,494,399 - +0.1
1,494,437 - -0.3
1,494,467 - +0.5
1,494,559 + +0.7
1,494,580 - +1.1
1,494,605 - -0.5
1,494,610 + +2.4
1,496,545 + 12526 mRNA_4158 0.19 -0.2

Or see this region's nucleotide sequence