Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4171

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12538 and 12539 are separated by 933 nucleotides12539 and 12540 are separated by 561 nucleotides mRNA_4170: 12538 - KOG1256 Long-chain acyl-CoA synthetases (AMP-forming), at 1,524,974 to 1,527,080 12538 mRNA_4171: 12539 - KOG2806 Chitinase, at 1,528,014 to 1,529,581 12539 mRNA_4172: 12540 - KOG1212 Amidases, at 1,530,143 to 1,531,631 12540

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,527,025 + +0.7
1,527,292 - -0.0
1,527,298 + -0.6
1,527,365 - -0.3
1,527,450 - +0.2
1,527,579 - +1.1
1,527,643 + -1.1
1,527,708 + +0.4
1,528,184 + 12539 mRNA_4171 0.11 -1.2
1,528,318 - 12539 mRNA_4171 0.19 +0.3
1,528,561 + 12539 mRNA_4171 0.35 +0.4
1,528,768 - 12539 mRNA_4171 0.48 -1.6
1,529,407 - 12539 mRNA_4171 0.89 -1.6
1,529,679 - +1.0

Or see this region's nucleotide sequence