Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4232

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12600 and 12601 are separated by 152 nucleotides mRNA_4232: 12600 - K14832 MAK21, NOC1, CEBPZ ribosome biogenesis protein MAK21, at 1,673,939 to 1,677,855 12600 mRNA_4233: 12601 - K11096 SNRPD2, SMD2 small nuclear ribonucleoprotein D2, at 1,678,008 to 1,678,995 12601

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,672,954 - +0.9
1,672,955 + -0.2
1,672,986 - -0.3
1,672,998 + -0.3
1,673,041 - +0.6
1,673,109 + +0.4
1,673,118 + -0.1
1,673,127 + +0.7
1,673,154 + +0.7
1,673,162 - -0.0
1,673,167 - +1.5
1,673,173 + +0.2
1,673,173 + -0.8
1,673,193 - -0.2
1,673,199 - +1.7
1,673,200 + +0.3
1,673,212 - +0.8
1,673,213 + -0.4
1,673,213 + -0.8
1,673,225 - -0.2
1,673,242 - +0.0
1,673,256 - -0.1
1,673,258 + +1.6
1,673,262 - +0.1
1,673,267 + -0.0
1,673,277 + +0.6
1,673,320 - +1.0
1,673,324 + +1.1
1,673,326 - +1.5
1,673,335 + +2.1
1,673,337 - +1.3
1,673,337 - +0.6
1,673,338 + +0.4
1,673,343 + +0.1
1,673,356 - +0.5
1,673,368 - +2.4
1,673,386 + +1.1
1,673,387 - +0.9
1,673,412 - +2.1
1,673,412 - +0.2
1,673,424 - -0.5
1,673,526 - +1.4
1,673,549 + +0.6
1,673,550 + +2.5
1,673,558 + +0.4
1,673,564 - +0.6
1,673,577 - +0.1
1,673,625 + +1.5
1,673,681 - -0.2
1,673,701 - +1.5
1,673,701 + +0.1
1,673,833 + -2.3
1,673,838 - +0.0
1,673,850 + -0.1
1,673,878 - -0.9
1,673,884 + -0.3
1,673,886 - +0.3
1,677,718 - -1.6
1,677,857 - +1.0

Or see this region's nucleotide sequence