Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4233

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12600 and 12601 are separated by 152 nucleotides12601 and 12602 are separated by 177 nucleotides mRNA_4232: 12600 - K14832 MAK21, NOC1, CEBPZ ribosome biogenesis protein MAK21, at 1,673,939 to 1,677,855 12600 mRNA_4233: 12601 - K11096 SNRPD2, SMD2 small nuclear ribonucleoprotein D2, at 1,678,008 to 1,678,995 12601 mRNA_4234: 12602 - SUPERFAMILY--SSF56112, at 1,679,173 to 1,681,802 12602

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,677,718 - -1.6
1,677,857 - +1.0
1,679,074 + +2.7
1,679,175 + +1.2
1,679,193 + +0.1
1,679,234 + +1.0
1,679,338 - +0.3
1,679,347 - +0.8
1,679,490 - 12602 mRNA_4234 0.12 +0.3
1,679,756 - 12602 mRNA_4234 0.22 -0.5
1,679,759 - 12602 mRNA_4234 0.22 +0.7
1,679,979 + 12602 mRNA_4234 0.31 -2.2

Or see this region's nucleotide sequence