Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4315

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12682 and 12683 are separated by 165 nucleotides12683 and 12684 are separated by 871 nucleotides mRNA_4314: 12682 - Hypothetical Protein, at 1,881,006 to 1,883,368 12682 mRNA_4315: 12683 - Hypothetical Protein, at 1,883,534 to 1,885,607 12683 mRNA_4316: 12684 - K03178 UBE1, UBA1 ubiquitin-activating enzyme E1, at 1,886,479 to 1,890,750 12684

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,882,615 - 12682 mRNA_4314 0.68 +0.9
1,882,749 - 12682 mRNA_4314 0.74 +0.6
1,882,794 + 12682 mRNA_4314 0.76 -0.6
1,882,807 + 12682 mRNA_4314 0.76 -0.2
1,882,856 + 12682 mRNA_4314 0.78 +1.8
1,882,960 - 12682 mRNA_4314 0.83 -0.6
1,883,106 - 12682 mRNA_4314 0.89 +0.4
1,883,214 - -1.3
1,883,247 + -0.3
1,883,400 + -0.9
1,883,404 - +0.5
1,883,553 - -0.2
1,883,766 - 12683 mRNA_4315 0.11 +0.7
1,883,791 - 12683 mRNA_4315 0.12 -0.6
1,883,827 + 12683 mRNA_4315 0.14 +0.9
1,884,099 + 12683 mRNA_4315 0.27 +2.7
1,884,114 + 12683 mRNA_4315 0.28 +0.5
1,884,402 - 12683 mRNA_4315 0.42 +2.1
1,884,504 - 12683 mRNA_4315 0.47 +0.3
1,884,666 + 12683 mRNA_4315 0.55 +0.7
1,884,693 - 12683 mRNA_4315 0.56 +0.8
1,884,971 - 12683 mRNA_4315 0.69 -0.2
1,885,084 + 12683 mRNA_4315 0.75 -0.7
1,885,111 - 12683 mRNA_4315 0.76 +1.6
1,885,412 + +0.4
1,885,431 + +0.8
1,885,560 - +0.0
1,885,566 + +0.3
1,885,667 - +0.7
1,885,714 - +1.9
1,885,721 - +0.6
1,885,723 + +1.4
1,885,736 + -0.0
1,885,739 - +0.4
1,885,740 + +0.7
1,885,755 - +0.6
1,885,775 + +0.3
1,885,780 - +0.3
1,885,818 + +1.5
1,885,834 + +2.0
1,885,851 + -0.5
1,885,857 - +0.4
1,885,861 - +1.1
1,885,862 - +0.1
1,885,883 + -1.4
1,885,890 + +0.6
1,885,890 - +2.0
1,885,991 - +1.1
1,886,000 - -0.8
1,886,009 + -0.5
1,886,147 + +1.0
1,886,179 - +0.1
1,886,285 - +0.5
1,886,308 + +1.0
1,886,308 + +0.9
1,886,414 - +0.8
1,886,439 - -0.3
1,886,450 + +1.3
1,886,459 - +0.2

Or see this region's nucleotide sequence