Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4316

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12683 and 12684 are separated by 871 nucleotides12684 and 12685 are separated by 906 nucleotides mRNA_4315: 12683 - Hypothetical Protein, at 1,883,534 to 1,885,607 12683 mRNA_4316: 12684 - K03178 UBE1, UBA1 ubiquitin-activating enzyme E1, at 1,886,479 to 1,890,750 12684 mRNA_4317: 12685 - K07025 K07025 putative hydrolase of the HAD superfamily, at 1,891,657 to 1,892,743 12685

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,885,560 - +0.0
1,885,566 + +0.3
1,885,667 - +0.7
1,885,714 - +1.9
1,885,721 - +0.6
1,885,723 + +1.4
1,885,736 + -0.0
1,885,739 - +0.4
1,885,740 + +0.7
1,885,755 - +0.6
1,885,775 + +0.3
1,885,780 - +0.3
1,885,818 + +1.5
1,885,834 + +2.0
1,885,851 + -0.5
1,885,857 - +0.4
1,885,861 - +1.1
1,885,862 - +0.1
1,885,883 + -1.4
1,885,890 + +0.6
1,885,890 - +2.0
1,885,991 - +1.1
1,886,000 - -0.8
1,886,009 + -0.5
1,886,147 + +1.0
1,886,179 - +0.1
1,886,285 - +0.5
1,886,308 + +1.0
1,886,308 + +0.9
1,886,414 - +0.8
1,886,439 - -0.3
1,886,450 + +1.3
1,886,459 - +0.2
1,890,779 - +0.8
1,890,880 - -1.9
1,890,905 - +0.5
1,890,954 - +1.3
1,891,101 + -0.1
1,891,252 - -0.3
1,891,360 - +1.5
1,891,360 - +0.7
1,891,362 - +0.4
1,891,366 + +0.7
1,891,378 + +2.7
1,891,383 - -0.2
1,891,388 + -0.2
1,891,390 + -1.2
1,891,393 - +0.5
1,891,404 + +0.8
1,891,406 + -0.1
1,891,410 + -1.2
1,891,411 - +0.4
1,891,428 + -0.3

Or see this region's nucleotide sequence