Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4672

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13039 and 13040 are separated by 472 nucleotides13040 and 13041 are separated by 379 nucleotides mRNA_4671: 13039 - Hypothetical Protein, at 739,616 to 741,558 13039 mRNA_4672: 13040 - K11979 UBR7 E3 ubiquitin-protein ligase UBR7, at 742,031 to 743,506 13040 mRNA_4673: 13041 - K01069 E3.1.2.6, gloB hydroxyacylglutathione hydrolase, at 743,886 to 745,346 13041

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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741,796 - -0.4
741,822 - -0.9
741,931 + +1.1
741,943 - +1.1
741,962 + +1.9
741,963 - +0.8
742,115 - -1.6
742,123 + +0.8
742,135 + +0.6
742,405 - 13040 mRNA_4672 0.25 +0.3
742,544 - 13040 mRNA_4672 0.35 -0.1
742,954 - 13040 mRNA_4672 0.63 +1.2
743,071 + 13040 mRNA_4672 0.70 +1.0
743,532 + +1.4
743,809 + +0.8
743,814 - -0.2
743,824 - +1.0
743,993 + -0.4
743,998 + +0.3
744,019 - -1.9
744,278 + 13041 mRNA_4673 0.27 +1.3

Or see this region's nucleotide sequence