Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4717

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13085 and 13086 are separated by 841 nucleotides mRNA_4717: 13085 - BLAST putative proteasome regulatory subunit 12 [Rhizoctoni..., at 844,086 to 846,101 13085 mRNA_4718: 13086 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSitePatterns-Thaumatin family signature.-PS00316,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 846,943 to 849,026 13086

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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843,134 - +0.9
843,245 + +1.9
843,258 + -0.9
843,374 - +0.4
843,400 + -0.3
843,408 + +0.2
843,413 + +1.0
843,553 - +0.2
843,572 + -0.5
843,584 - -0.6
843,676 - +0.5
843,708 + -1.7
843,979 + +0.7
844,109 - +0.2
844,159 + -0.3
844,300 + 13085 mRNA_4717 0.11 +0.8
844,403 - 13085 mRNA_4717 0.16 +1.2
844,428 + 13085 mRNA_4717 0.17 -0.4
844,477 + 13085 mRNA_4717 0.19 -0.2
844,608 + 13085 mRNA_4717 0.26 +0.2
845,186 - 13085 mRNA_4717 0.55 +1.0
845,460 - 13085 mRNA_4717 0.68 -0.6
845,470 - 13085 mRNA_4717 0.69 +0.0
845,653 + 13085 mRNA_4717 0.78 +0.5
845,756 + 13085 mRNA_4717 0.83 -0.1
845,760 - 13085 mRNA_4717 0.83 +2.4
845,781 + 13085 mRNA_4717 0.84 -3.8
845,888 + 13085 mRNA_4717 0.89 -0.2
846,034 + -0.4
846,037 - +2.8
846,048 + +0.8
846,250 - -0.5
846,365 - +1.2
846,479 - +2.4
846,495 + -1.0
846,513 + +0.0
846,598 - -1.3
846,617 + +1.5
846,627 - +0.5
846,630 - +1.4
846,645 + +0.8
846,649 + -0.7
846,660 + +1.2
846,782 - +1.8
846,785 - -0.1
846,794 - -0.8
846,812 - +1.0
846,919 - +0.5
847,070 - +0.2
847,094 - +1.6

Or see this region's nucleotide sequence