Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4786

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13153 and 13154 are separated by 614 nucleotides13154 and 13155 are separated by 142 nucleotides mRNA_4785: 13153 - KOG1577 Aldo/keto reductase family proteins, at 1,009,079 to 1,010,386 13153 mRNA_4786: 13154 - Hypothetical Protein, at 1,011,001 to 1,011,498 13154 mRNA_4787: 13155 - SUPERFAMILY--SSF49785, at 1,011,641 to 1,014,528 13155

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,010,019 - 13153 mRNA_4785 0.72 +1.3
1,010,022 - 13153 mRNA_4785 0.72 +0.5
1,010,309 - -0.3
1,010,315 - +0.9
1,010,464 - +0.3
1,010,609 - +1.8
1,010,712 - +1.1
1,010,733 - +0.4
1,010,744 - +0.7
1,010,745 - +0.5
1,010,745 + +1.8
1,010,749 - +0.0
1,010,751 - -0.2
1,010,759 + +0.6
1,010,759 - +0.1
1,010,759 - -1.0
1,010,759 - -0.6
1,010,762 + -0.2
1,010,763 + -1.3
1,010,764 + +0.1
1,010,764 + +0.3
1,010,785 - +0.9
1,010,796 - +0.5
1,010,798 - -1.4
1,010,804 + +0.0
1,010,806 - -0.2
1,010,853 + +0.1
1,010,872 - +0.7
1,010,873 - +0.9
1,010,880 - -0.4
1,010,886 + +0.0
1,010,887 + -0.3
1,010,892 + -0.7
1,010,898 - +0.4
1,010,912 + +0.7
1,010,913 + -0.8
1,010,914 - -1.5
1,010,919 + +0.3
1,010,927 + +0.1
1,010,929 - -0.1
1,010,943 + -0.1
1,010,950 + -0.4
1,010,974 - -1.0
1,010,976 + +1.5
1,010,979 - +0.3
1,010,983 + +0.2
1,010,986 - +1.4
1,010,990 - +0.2
1,011,002 - -0.4
1,011,003 - +0.4
1,011,003 + +1.5
1,011,004 - +1.2
1,011,005 - -1.7
1,011,012 - +0.2
1,011,061 + 13154 mRNA_4786 0.12 -0.0
1,011,089 - 13154 mRNA_4786 0.18 +0.9
1,011,130 - 13154 mRNA_4786 0.26 +0.7
1,011,134 + 13154 mRNA_4786 0.27 +0.3
1,011,141 + 13154 mRNA_4786 0.28 +0.7
1,011,161 + 13154 mRNA_4786 0.32 +1.9
1,011,172 - 13154 mRNA_4786 0.34 +0.3
1,011,172 + 13154 mRNA_4786 0.34 +0.7
1,011,175 - 13154 mRNA_4786 0.35 +1.7
1,011,185 - 13154 mRNA_4786 0.37 +0.4
1,011,194 + 13154 mRNA_4786 0.39 +0.1
1,011,197 + 13154 mRNA_4786 0.39 -0.1
1,011,211 - 13154 mRNA_4786 0.42 +0.4
1,011,214 - 13154 mRNA_4786 0.43 +0.1
1,011,221 + 13154 mRNA_4786 0.44 +0.3
1,011,224 + 13154 mRNA_4786 0.45 -0.3
1,011,228 + 13154 mRNA_4786 0.46 -0.1
1,011,230 - 13154 mRNA_4786 0.46 +0.7
1,011,230 + 13154 mRNA_4786 0.46 +0.1
1,011,243 - 13154 mRNA_4786 0.49 -1.2
1,011,244 - 13154 mRNA_4786 0.49 +1.0
1,011,245 - 13154 mRNA_4786 0.49 -0.0
1,011,246 + 13154 mRNA_4786 0.49 +0.5
1,011,263 - 13154 mRNA_4786 0.53 -1.4
1,011,271 + 13154 mRNA_4786 0.54 +0.1
1,011,274 + 13154 mRNA_4786 0.55 +1.3
1,011,276 - 13154 mRNA_4786 0.55 -0.1
1,011,286 - 13154 mRNA_4786 0.57 +0.5
1,011,287 + 13154 mRNA_4786 0.57 +0.7
1,011,288 + 13154 mRNA_4786 0.58 +0.7
1,011,290 - 13154 mRNA_4786 0.58 -1.7
1,011,296 - 13154 mRNA_4786 0.59 +0.5
1,011,299 - 13154 mRNA_4786 0.60 -0.8
1,011,304 + 13154 mRNA_4786 0.61 +0.2
1,011,313 - 13154 mRNA_4786 0.63 +0.9
1,011,322 + 13154 mRNA_4786 0.64 +0.9
1,011,326 + 13154 mRNA_4786 0.65 +0.1
1,011,327 + 13154 mRNA_4786 0.65 +0.2
1,011,334 - 13154 mRNA_4786 0.67 -0.4
1,011,340 - 13154 mRNA_4786 0.68 -0.4
1,011,342 - 13154 mRNA_4786 0.68 +1.9
1,011,342 + 13154 mRNA_4786 0.68 +1.0
1,011,345 + 13154 mRNA_4786 0.69 +0.8
1,011,355 + 13154 mRNA_4786 0.71 +0.5
1,011,362 - 13154 mRNA_4786 0.72 +0.6
1,011,370 - 13154 mRNA_4786 0.74 -0.8
1,011,374 + 13154 mRNA_4786 0.75 +0.1
1,011,374 + 13154 mRNA_4786 0.75 +0.6
1,011,381 + 13154 mRNA_4786 0.76 +0.4
1,011,384 + 13154 mRNA_4786 0.77 +1.6
1,011,496 - -0.2
1,011,501 - +0.1
1,011,530 - -1.2
1,011,623 + -1.3
1,012,237 + 13155 mRNA_4787 0.21 +2.2

Or see this region's nucleotide sequence