Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4798

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13165 and 13166 are separated by 622 nucleotides mRNA_4797: 13165 - K02901 RP-L27e, RPL27 large subunit ribosomal protein L27e, at 1,032,493 to 1,033,632 13165 mRNA_4798: 13166 - Hypothetical Protein, at 1,034,255 to 1,037,154 13166

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,034,020 + +1.3
1,034,026 + +0.6
1,034,173 - +2.4
1,034,178 + -0.2
1,034,300 - +1.2
1,034,304 + +1.9
1,034,315 - -0.1
1,034,338 - +0.6
1,034,476 + -0.0
1,034,762 - 13166 mRNA_4798 0.17 +1.4
1,035,396 - 13166 mRNA_4798 0.39 +1.5
1,035,633 + 13166 mRNA_4798 0.48 +1.3
1,035,957 + 13166 mRNA_4798 0.59 -0.3
1,035,960 - 13166 mRNA_4798 0.59 -0.5
1,036,096 - 13166 mRNA_4798 0.63 +1.5
1,036,239 + 13166 mRNA_4798 0.68 +0.4
1,036,692 + 13166 mRNA_4798 0.84 +1.4
1,037,094 - -0.0
1,037,097 + -0.1
1,037,237 - +1.3
1,037,272 - +0.6
1,037,424 - -0.7
1,037,701 + +0.6
1,037,753 + +1.2
1,038,000 - +0.6

Or see this region's nucleotide sequence