Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4922

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13289 and 13290 are separated by 426 nucleotides13290 and 13291 are separated by 346 nucleotides mRNA_4921: 13289 - K12156 CYP83A1 cytochrome P450, family 83, subfamily A, polypeptide 1, at 1,313,385 to 1,315,387 13289 mRNA_4922: 13290 - K18670 YAK1 dual specificity protein kinase YAK1, at 1,315,814 to 1,320,351 13290 mRNA_4923: 13291 - K03141 TFIIH1, GTF2H1, TFB1 transcription initiation factor TFIIH subunit 1, at 1,320,698 to 1,323,090 13291

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,314,964 + 13289 mRNA_4921 0.79 -0.2
1,315,111 - 13289 mRNA_4921 0.86 +0.5
1,315,438 + +0.2
1,315,708 + +0.9
1,316,226 + +1.1
1,316,304 - 13290 mRNA_4922 0.11 -0.3
1,317,765 - 13290 mRNA_4922 0.43 -0.1
1,318,081 + 13290 mRNA_4922 0.50 -0.3
1,318,083 - 13290 mRNA_4922 0.50 -0.3
1,318,371 + 13290 mRNA_4922 0.56 +1.1
1,318,397 + 13290 mRNA_4922 0.57 +0.5
1,318,500 - 13290 mRNA_4922 0.59 +1.3
1,318,702 + 13290 mRNA_4922 0.64 -1.3
1,318,838 + 13290 mRNA_4922 0.67 +0.3
1,319,046 - 13290 mRNA_4922 0.71 +0.4
1,319,534 - 13290 mRNA_4922 0.82 -0.3
1,319,848 - 13290 mRNA_4922 0.89 -0.0
1,319,966 - -0.6
1,319,989 + +0.0
1,320,149 - +0.5
1,320,169 + -0.6
1,320,299 - +1.2
1,320,404 + -1.7
1,320,410 + -0.5
1,320,423 + +1.5
1,320,428 + -0.0
1,320,428 - +0.3
1,320,433 - +3.5
1,320,439 - -0.7
1,320,462 + -0.3

Or see this region's nucleotide sequence