Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4964

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13331 and 13332 are separated by 931 nucleotides13332 and 13333 are separated by 717 nucleotides mRNA_4963: 13331 - Hypothetical Protein, at 1,417,369 to 1,418,489 13331 mRNA_4964: 13332 - K08334 BECN1, VPS30, ATG6 beclin 1, at 1,419,421 to 1,420,996 13332 mRNA_4965: 13333 - K15156 MED14, RGR1 mediator of RNA polymerase II transcription subunit 14, at 1,421,714 to 1,425,387 13333

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,418,432 + -1.0
1,418,577 + +0.5
1,418,693 + +1.9
1,418,713 - -0.1
1,418,953 - -0.4
1,419,035 + +0.6
1,419,190 + -0.3
1,419,264 - -0.6
1,419,293 + -0.6
1,419,715 - 13332 mRNA_4964 0.19 -0.3
1,419,721 + 13332 mRNA_4964 0.19 +0.7
1,419,848 + 13332 mRNA_4964 0.27 +0.9
1,419,891 - 13332 mRNA_4964 0.30 +0.4
1,420,130 + 13332 mRNA_4964 0.45 +0.7
1,420,265 - 13332 mRNA_4964 0.54 +0.8
1,420,351 - 13332 mRNA_4964 0.59 +0.1
1,420,718 - 13332 mRNA_4964 0.82 +0.2
1,420,878 - +0.3
1,420,900 + +0.3
1,421,043 + +2.5
1,421,158 + +1.7
1,421,315 + +1.1
1,421,440 - -0.1
1,421,454 - -0.5
1,421,459 + +0.2

Or see this region's nucleotide sequence