Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4994

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13361 and 13362 are separated by 293 nucleotides13362 and 13363 are separated by 202 nucleotides mRNA_4993: 13361 - K20660 CYP709 cytochrome P450, family 709, at 1,494,883 to 1,497,041 13361 mRNA_4994: 13362 - K09568 FKBP1 FK506-binding protein 1, at 1,497,335 to 1,498,309 13362 mRNA_4995: 13363 - Hypothetical Protein, at 1,498,512 to 1,499,346 13363

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,496,964 + +0.6
1,496,965 + +1.4
1,497,086 - +0.7
1,497,114 - -0.6
1,497,123 + -0.4
1,497,126 + -1.9
1,497,214 + +1.1
1,497,394 - +1.9
1,497,518 - 13362 mRNA_4994 0.19 +0.6
1,497,522 - 13362 mRNA_4994 0.19 -0.4
1,497,524 - 13362 mRNA_4994 0.19 -1.0
1,497,707 + 13362 mRNA_4994 0.38 +1.1
1,497,879 - 13362 mRNA_4994 0.56 +0.8
1,498,149 + 13362 mRNA_4994 0.83 -0.3
1,498,155 + 13362 mRNA_4994 0.84 +0.7
1,498,288 + +2.5
1,498,424 - +0.6
1,498,433 + -1.1
1,498,441 - +1.1
1,498,470 + -1.0
1,498,560 - +0.8
1,498,567 - -0.2
1,498,727 - 13363 mRNA_4995 0.26 -0.9
1,499,029 + 13363 mRNA_4995 0.62 -0.7
1,499,160 + 13363 mRNA_4995 0.78 +0.4

Or see this region's nucleotide sequence