Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4996

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13363 and 13364 are separated by 137 nucleotides13364 and 13365 are separated by 226 nucleotides mRNA_4995: 13363 - Hypothetical Protein, at 1,498,512 to 1,499,346 13363 mRNA_4996: 13364 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 1,499,484 to 1,500,162 13364 mRNA_4997: 13365 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 1,500,389 to 1,502,919 13365

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,498,560 - +0.8
1,498,567 - -0.2
1,498,727 - 13363 mRNA_4995 0.26 -0.9
1,499,029 + 13363 mRNA_4995 0.62 -0.7
1,499,160 + 13363 mRNA_4995 0.78 +0.4
1,499,339 - +0.9
1,499,443 - +0.7
1,499,467 - +0.2
1,499,475 + +0.5
1,500,181 - -0.1
1,500,189 - -0.2
1,500,194 + -0.1
1,500,198 - +0.1
1,500,207 + -0.7
1,500,209 + -0.1
1,500,211 + -0.1
1,500,212 - +1.8
1,500,214 - -0.5
1,500,220 - -0.0
1,500,229 + +1.2
1,500,354 + +0.2
1,500,371 + -0.4
1,500,490 + -2.2
1,500,635 - +1.1
1,500,659 + 13365 mRNA_4997 0.11 -0.1
1,500,894 - 13365 mRNA_4997 0.20 -1.8

Or see this region's nucleotide sequence