Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4999

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13366 and 13367 are separated by 367 nucleotides13367 and 13368 are separated by 196 nucleotides mRNA_4998: 13366 - KOG4169 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases, at 1,503,499 to 1,504,533 13366 mRNA_4999: 13367 - Hypothetical Protein, at 1,504,901 to 1,505,364 13367 mRNA_5000: 13368 - K16302 CNNM metal transporter CNNM, at 1,505,561 to 1,508,084 13368

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
1,504,034 - 13366 mRNA_4998 0.52 +1.6
1,504,056 + 13366 mRNA_4998 0.54 +0.1
1,504,182 + 13366 mRNA_4998 0.66 +1.2
1,504,302 + 13366 mRNA_4998 0.78 +1.9
1,504,356 + 13366 mRNA_4998 0.83 -0.3
1,504,553 - +2.1
1,504,618 - -0.2
1,505,051 - 13367 mRNA_4999 0.32 +2.1
1,505,075 + 13367 mRNA_4999 0.38 +0.9
1,505,363 - -1.5
1,505,377 - +0.5
1,505,648 + +1.3
1,505,667 + -0.4

Or see this region's nucleotide sequence