Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5258

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13625 and 13626 are separated by 199 nucleotides13626 and 13627 are separated by 419 nucleotides mRNA_5257: 13625 - K11887 PAAF1, RPN14 proteasomal ATPase-associated factor 1, at 295,850 to 297,525 13625 mRNA_5258: 13626 - KOG0538 Glycolate oxidase, at 297,725 to 299,742 13626 mRNA_5259: 13627 - K01424 E3.5.1.1, ansA, ansB L-asparaginase, at 300,162 to 301,995 13627

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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296,951 - 13625 mRNA_5257 0.66 +1.5
296,975 + 13625 mRNA_5257 0.67 -0.1
297,151 + 13625 mRNA_5257 0.78 +0.3
297,423 + +0.9
297,786 + -0.6
297,834 - +1.0
297,842 + +1.5
297,899 + +1.1
298,098 - 13626 mRNA_5258 0.18 -2.0
298,128 - 13626 mRNA_5258 0.20 +0.9
298,128 - 13626 mRNA_5258 0.20 -0.6
298,239 + 13626 mRNA_5258 0.25 +1.1
298,291 + 13626 mRNA_5258 0.28 +0.6
298,575 - 13626 mRNA_5258 0.42 +2.7
298,880 - 13626 mRNA_5258 0.57 -0.0
298,995 - 13626 mRNA_5258 0.63 -0.5
299,330 + 13626 mRNA_5258 0.80 +1.6
299,438 - 13626 mRNA_5258 0.85 -0.2
299,594 + -0.2
299,895 - +0.3
299,921 + +1.3
300,209 + +0.7
300,220 + -1.6
300,237 + +0.0
300,655 - 13627 mRNA_5259 0.27 -0.1

Or see this region's nucleotide sequence