Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5284

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13652 and 13653 are separated by 718 nucleotides mRNA_5284: 13652 - Hypothetical Protein, at 356,424 to 357,463 13652 mRNA_5285: 13653 - HMMPfam-FAD binding domain-PF01494,PRINTS-Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature-PR00420,SUPERFAMILY--SSF51905, at 358,182 to 359,480 13653

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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355,621 - +0.1
355,748 - +0.8
355,759 - +0.8
355,761 + +0.3
355,872 - +1.2
356,174 + +0.8
356,204 + -0.3
356,342 + -0.1
356,342 + -0.1
356,356 + -0.7
356,497 - -0.0
356,656 - 13652 mRNA_5284 0.22 +0.5
357,003 + 13652 mRNA_5284 0.56 +0.5
357,068 + 13652 mRNA_5284 0.62 -0.4
357,097 - 13652 mRNA_5284 0.65 +0.7
357,524 - -1.1
357,527 + -0.1
357,573 - +0.2
357,681 - -1.6
357,692 + +0.1
357,830 - -0.1
357,844 + +0.0
357,976 + -0.9
358,113 + +2.2
358,130 - -0.1
358,243 - +0.1
358,270 - +1.8
358,318 + 13653 mRNA_5285 0.10 +0.8
358,442 + 13653 mRNA_5285 0.20 +0.2

Or see this region's nucleotide sequence