Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5305

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13672 and 13673 are separated by 479 nucleotides13673 and 13674 are separated by 267 nucleotides mRNA_5304: 13672 - KOG3598 Thyroid hormone receptor-associated protein complex, subunit TRAP230, at 409,088 to 413,869 13672 mRNA_5305: 13673 - K14859 SSF1_2 ribosome biogenesis protein SSF1/2, at 414,349 to 416,763 13673 mRNA_5306: 13674 - BLAST PQ-loop repeat protein [Colletotrichum tofieldiae], at 417,031 to 419,663 13674

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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413,378 - 13672 mRNA_5304 0.90 +1.1
413,495 + +1.0
413,645 - +0.4
413,918 + -0.2
413,942 - +0.1
414,232 + -0.1
414,245 - +0.2
415,920 - 13673 mRNA_5305 0.65 +0.7
416,203 - 13673 mRNA_5305 0.77 -0.2
416,485 + 13673 mRNA_5305 0.88 +0.1
416,485 + 13673 mRNA_5305 0.88 -0.1
416,610 + +1.1
416,649 + +0.8
416,971 + -0.7
416,977 + +0.0
417,024 + -0.1
417,028 - +1.1
417,065 - -0.2
417,091 - +0.5
417,365 - 13674 mRNA_5306 0.13 +0.8
417,686 - 13674 mRNA_5306 0.25 +0.8

Or see this region's nucleotide sequence