Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5628

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13995 and 13996 are separated by 162 nucleotides13996 and 13997 are separated by 368 nucleotides mRNA_5627: 13995 - K10756 RFC3_5 replication factor C subunit 3/5, at 539,729 to 541,360 13995 mRNA_5628: 13996 - SUPERFAMILY--SSF57997, at 541,523 to 547,167 13996 mRNA_5629: 13997 - K15430 TRM11, TRMT11 tRNA (guanine10-N2)-methyltransferase, at 547,536 to 549,644 13997

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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541,416 - -0.9
541,421 + -0.5
541,421 + -0.6
541,421 + +0.6
541,421 + +0.6
541,435 - +1.3
541,455 + +0.1
541,543 - -0.3
541,567 + +0.3
541,582 + +0.3
541,729 - -1.7
541,754 + +1.2
541,847 + -0.8
541,862 - -0.1
541,893 - -1.0
541,900 - +0.7
542,004 + +1.0
542,149 + 13996 mRNA_5628 0.11 +0.5
542,191 + 13996 mRNA_5628 0.12 -0.8
542,584 - 13996 mRNA_5628 0.19 +0.3
542,708 + 13996 mRNA_5628 0.21 -0.3
542,730 + 13996 mRNA_5628 0.21 -0.1
543,167 + 13996 mRNA_5628 0.29 -0.3
543,208 + 13996 mRNA_5628 0.30 +0.6
543,638 + 13996 mRNA_5628 0.37 +0.2
543,677 + 13996 mRNA_5628 0.38 +1.4
543,830 - 13996 mRNA_5628 0.41 -0.2
544,249 - 13996 mRNA_5628 0.48 +1.1
544,439 - 13996 mRNA_5628 0.52 -1.6
544,494 - 13996 mRNA_5628 0.53 +1.6
544,938 + 13996 mRNA_5628 0.60 +0.3
544,977 + 13996 mRNA_5628 0.61 +0.2
545,122 + 13996 mRNA_5628 0.64 +0.1
545,318 - 13996 mRNA_5628 0.67 -1.3
545,504 + 13996 mRNA_5628 0.71 +0.4
545,522 - 13996 mRNA_5628 0.71 +0.5
545,601 + 13996 mRNA_5628 0.72 +1.3
545,860 - 13996 mRNA_5628 0.77 -0.7
546,145 - 13996 mRNA_5628 0.82 +2.3
546,222 + 13996 mRNA_5628 0.83 +1.0
546,301 + 13996 mRNA_5628 0.85 -3.4
546,586 - 13996 mRNA_5628 0.90 +0.9
546,588 + 13996 mRNA_5628 0.90 -0.7
546,603 + +2.6
546,737 - +1.6
546,885 + +1.6
546,985 - +0.6
547,313 + +1.0
547,328 - -0.2
547,340 + -1.1
547,379 + +0.2
547,464 - +0.3
547,473 - -0.6
547,476 - -0.4
547,478 + +0.1
547,521 - -2.0
547,627 - -1.5
547,787 - 13997 mRNA_5629 0.12 +1.5
547,909 + 13997 mRNA_5629 0.18 +2.3
547,918 - 13997 mRNA_5629 0.18 +0.1
548,058 - 13997 mRNA_5629 0.25 +0.6
548,090 + 13997 mRNA_5629 0.26 -0.4
548,109 - 13997 mRNA_5629 0.27 -1.6

Or see this region's nucleotide sequence