Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5707

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14075 and 14076 are separated by 840 nucleotides mRNA_5707: 14075 - Hypothetical Protein, at 736,463 to 742,238 14075 mRNA_5708: 14076 - KOG4774 Uncharacterized conserved protein, at 743,079 to 743,817 14076

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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735,501 + +0.7
735,512 + -0.1
735,820 + +0.5
735,937 + -1.9
736,516 - -0.0
736,523 + +1.6
736,560 + -0.1
736,724 + +0.7
736,974 - +0.1
737,434 + 14075 mRNA_5707 0.17 -1.5
737,951 - 14075 mRNA_5707 0.26 +0.7
738,261 - 14075 mRNA_5707 0.31 -0.5
738,434 + 14075 mRNA_5707 0.34 +0.4
738,457 - 14075 mRNA_5707 0.35 +1.3
738,556 - 14075 mRNA_5707 0.36 +1.0
738,571 + 14075 mRNA_5707 0.36 +0.0
738,708 - 14075 mRNA_5707 0.39 +1.9
738,722 + 14075 mRNA_5707 0.39 +1.2
738,943 - 14075 mRNA_5707 0.43 -1.1
739,002 - 14075 mRNA_5707 0.44 -0.6
739,751 + 14075 mRNA_5707 0.57 +0.3
739,768 - 14075 mRNA_5707 0.57 -0.2
739,953 - 14075 mRNA_5707 0.60 -0.4
739,963 + 14075 mRNA_5707 0.61 -0.3
739,974 - 14075 mRNA_5707 0.61 -0.1
740,008 - 14075 mRNA_5707 0.61 -0.0
740,324 + 14075 mRNA_5707 0.67 +1.3
740,397 - 14075 mRNA_5707 0.68 +2.3
741,321 - 14075 mRNA_5707 0.84 +0.1
741,382 - 14075 mRNA_5707 0.85 +0.1
741,453 - 14075 mRNA_5707 0.86 -0.5
741,757 + +1.1
741,824 - +0.7
742,051 - +0.8
742,185 - +0.4
742,271 + +1.1
742,393 + +0.7
742,438 - +2.3
742,556 - +0.1
742,559 + -0.8
742,582 + -0.4
742,602 + +1.2
742,717 + +0.9
742,723 - +0.0
742,744 + +1.0
742,761 - +0.5
742,860 - +0.1

Or see this region's nucleotide sequence