Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5746

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14114 and 14115 are separated by 354 nucleotides mRNA_5746: 14114 - Hypothetical Protein, at 847,090 to 848,966 14114 mRNA_5747: 14115 - HMMPfam-F-box-like-PF12937, at 849,321 to 849,879 14115

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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846,157 - +0.0
846,169 - +0.8
846,196 + +2.0
846,200 + -0.5
846,200 - +2.0
846,215 + +0.4
846,255 + +0.3
846,287 + -0.0
846,306 - -0.0
846,330 + +1.7
846,490 - +0.1
846,503 + +0.2
846,641 + +0.3
846,777 + +0.3
846,777 + +0.5
846,777 - +1.4
846,794 - +0.5
846,807 + -0.7
846,942 - +2.0
847,105 - +0.9
847,586 - 14114 mRNA_5746 0.26 -0.5
848,383 + 14114 mRNA_5746 0.69 +0.8
848,549 + 14114 mRNA_5746 0.78 -0.2
848,692 - 14114 mRNA_5746 0.85 +1.4
848,725 + 14114 mRNA_5746 0.87 +1.0
848,855 - +0.1
849,015 - -0.5
849,161 + +0.4
849,219 + +2.3
849,515 - 14115 mRNA_5747 0.35 +1.1
849,640 - 14115 mRNA_5747 0.57 +0.2
849,661 - 14115 mRNA_5747 0.61 +1.0
849,776 - 14115 mRNA_5747 0.81 +0.8
849,802 + 14115 mRNA_5747 0.86 +0.6
849,804 - 14115 mRNA_5747 0.86 +1.5
849,949 - -0.1
849,964 - +0.4

Or see this region's nucleotide sequence