Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5750

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14117 and 14118 are separated by 268 nucleotides14118 and 14119 are separated by 435 nucleotides mRNA_5749: 14117 - K14863 YTM1, WDR12 ribosome biogenesis protein YTM1, at 850,865 to 852,979 14117 mRNA_5750: 14118 - KOG2306 Uncharacterized conserved protein, at 853,248 to 855,227 14118 mRNA_5751: 14119 - K14708 SLC26A11 solute carrier family 26 (sodium-independent sulfate anion transporter), member 11, at 855,663 to 858,482 14119

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
853,064 + +1.1
853,075 + +1.1
853,083 - +1.2
853,100 + +0.9
853,372 - +0.1
853,374 + +1.7
853,384 + -1.2
853,499 + 14118 mRNA_5750 0.13 -0.2
853,826 + 14118 mRNA_5750 0.29 +0.1
853,827 - 14118 mRNA_5750 0.29 +1.2
853,976 - 14118 mRNA_5750 0.37 -0.2
854,240 - 14118 mRNA_5750 0.50 +1.6
854,280 + 14118 mRNA_5750 0.52 +0.7
854,573 + 14118 mRNA_5750 0.67 -0.0
854,934 + 14118 mRNA_5750 0.85 +1.0
854,986 - 14118 mRNA_5750 0.88 +1.2
855,101 + +0.3
855,114 - -2.6
855,129 + +0.2
855,143 + +0.2
855,145 + +1.7
855,153 - -0.2
855,424 - +0.5
855,433 + +2.8
855,439 - +0.2
855,483 + +0.6
855,577 + +0.1
855,587 + +2.5
855,903 - +0.2
856,082 - 14119 mRNA_5751 0.15 +0.1
856,129 - 14119 mRNA_5751 0.17 +0.4

Or see this region's nucleotide sequence