Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5755

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14123 and 14124 are separated by 353 nucleotides mRNA_5755: 14123 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 868,685 to 870,428 14123 mRNA_5756: 14124 - HMMPfam-Myb-like DNA-binding domain-PF00249,ProSiteProfiles-Myb-like domain profile.-PS50090,ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689, at 870,782 to 872,057 14124

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
867,691 - +0.2
867,713 + +0.6
867,722 + -1.4
867,727 - +1.9
867,731 + +0.8
867,741 - +0.8
867,741 - +0.5
867,742 + -2.0
867,742 + +1.5
867,745 + +0.6
867,746 + +0.8
867,749 + -0.5
867,750 - -1.0
867,762 - -0.4
867,766 - +1.2
867,769 + +0.5
867,880 + -0.7
867,906 + -1.0
868,162 + +0.8
868,173 - -0.7
868,203 + -0.2
868,617 + -0.9
868,777 + +1.0
868,793 + +0.3
868,796 - +0.1
868,921 + 14123 mRNA_5755 0.14 +0.9
868,925 - 14123 mRNA_5755 0.14 -2.2
868,927 + 14123 mRNA_5755 0.14 -0.1
868,943 - 14123 mRNA_5755 0.15 -0.1
868,959 + 14123 mRNA_5755 0.16 +1.5
868,973 - 14123 mRNA_5755 0.17 +2.3
869,086 + 14123 mRNA_5755 0.23 +0.3
869,816 - 14123 mRNA_5755 0.65 +0.9
869,818 - 14123 mRNA_5755 0.65 +1.5
869,848 + 14123 mRNA_5755 0.67 +1.1
869,983 - 14123 mRNA_5755 0.74 +0.2
870,019 - 14123 mRNA_5755 0.76 +0.3
870,246 - 14123 mRNA_5755 0.90 +0.9
870,268 + +1.7
870,308 - +0.2
870,414 - -0.6
870,535 - -0.1
870,682 - +2.6
870,722 + +0.2
870,724 + +0.6
870,726 + +1.1
870,751 + +0.8
870,787 + -0.8
870,876 + +0.5
870,881 - +0.7
871,154 - 14124 mRNA_5756 0.29 -0.0

Or see this region's nucleotide sequence