Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5805

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14172 and 14173 are separated by 192 nucleotides14173 and 14174 are separated by 751 nucleotides mRNA_5804: 14172 - Hypothetical Protein, at 978,003 to 978,815 14172 mRNA_5805: 14173 - HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324, at 979,008 to 980,217 14173 mRNA_5806: 14174 - KOG4197 FOG PPR repeat, at 980,969 to 985,772 14174

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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978,141 + 14172 mRNA_5804 0.17 +0.6
978,609 - 14172 mRNA_5804 0.75 +0.2
979,464 + 14173 mRNA_5805 0.38 +0.5
979,655 - 14173 mRNA_5805 0.53 +3.1
979,728 + 14173 mRNA_5805 0.60 +2.3
979,740 + 14173 mRNA_5805 0.60 +1.0
980,025 - 14173 mRNA_5805 0.84 +1.8
980,274 - +0.2
980,277 - +0.8
980,312 + -0.2
980,312 + -0.4
980,326 - +1.1
980,334 - +1.0
980,457 - -2.1
980,743 + +0.7
980,946 + +3.0

Or see this region's nucleotide sequence