Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5884

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14251 and 14252 are separated by 251 nucleotides14252 and 14253 are separated by 168 nucleotides mRNA_5883: 14251 - K09668 LARGE glycosyltransferase-like protein LARGE, at 1,158,522 to 1,160,297 14251 mRNA_5884: 14252 - K13830 ARO1 pentafunctional AROM polypeptide, at 1,160,549 to 1,165,878 14252 mRNA_5885: 14253 - KOG1424 Predicted GTP-binding protein MMR1, at 1,166,047 to 1,168,638 14253

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,159,736 + 14251 mRNA_5883 0.68 +1.4
1,159,743 + 14251 mRNA_5883 0.69 +0.1
1,159,752 - 14251 mRNA_5883 0.69 +0.3
1,159,879 + 14251 mRNA_5883 0.76 -0.1
1,159,886 - 14251 mRNA_5883 0.77 +0.9
1,160,470 - -0.0
1,160,480 - +0.9
1,160,501 + +1.7
1,165,072 + 14252 mRNA_5884 0.85 -2.3
1,165,935 - +0.0
1,166,076 - +2.9
1,166,097 + +0.0
1,166,115 + +0.1
1,166,380 + 14253 mRNA_5885 0.13 -0.2

Or see this region's nucleotide sequence