Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6066

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14433 and 14434 are separated by 395 nucleotides14434 and 14435 are separated by 98 nucleotides mRNA_6065: 14433 - KOG1082 Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing, at 1,560,376 to 1,561,281 14433 mRNA_6066: 14434 - K20363 YIP1, YIPF5 protein transport protein YIP1, at 1,561,677 to 1,562,701 14434 mRNA_6067: 14435 - K14798 LTV1 protein LTV1, at 1,562,800 to 1,564,980 14435

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,560,967 - 14433 mRNA_6065 0.65 -0.3
1,560,978 + 14433 mRNA_6065 0.66 -1.3
1,561,001 + 14433 mRNA_6065 0.69 +0.1
1,561,004 - 14433 mRNA_6065 0.69 +0.2
1,561,010 + 14433 mRNA_6065 0.70 -0.4
1,561,011 + 14433 mRNA_6065 0.70 -1.1
1,561,084 - 14433 mRNA_6065 0.78 +0.8
1,561,189 + 14433 mRNA_6065 0.90 -1.7
1,561,274 - -0.0
1,561,340 - +0.3
1,561,538 - +0.9
1,561,548 + -0.1
1,561,556 - -0.0

Or see this region's nucleotide sequence