Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6079

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14446 and 14447 are separated by 113 nucleotides14447 and 14448 are separated by 342 nucleotides mRNA_6078: 14446 - HMMPfam-Essential protein Yae1, N terminal-PF09811, at 1,592,607 to 1,593,994 14446 mRNA_6079: 14447 - K12776 MEK1 meiosis-specific serine/threonine-protein kinase MEK1, at 1,594,108 to 1,596,398 14447 mRNA_6080: 14448 - KOG4379 Uncharacterized conserved protein (tumor antigen CML66 in humans), at 1,596,741 to 1,598,901 14448

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,594,101 - -1.4
1,594,334 - +0.5
1,594,381 + 14447 mRNA_6079 0.12 +0.2
1,594,385 - 14447 mRNA_6079 0.12 +0.4
1,594,442 + 14447 mRNA_6079 0.15 -0.3
1,594,444 + 14447 mRNA_6079 0.15 +0.2
1,594,489 - 14447 mRNA_6079 0.17 -0.3
1,594,505 - 14447 mRNA_6079 0.17 -0.6
1,594,506 + 14447 mRNA_6079 0.17 +0.4
1,594,626 - 14447 mRNA_6079 0.23 -0.2
1,594,708 + 14447 mRNA_6079 0.26 -0.4
1,594,710 - 14447 mRNA_6079 0.26 +1.7
1,594,803 - 14447 mRNA_6079 0.30 -1.3
1,594,829 + 14447 mRNA_6079 0.31 +1.2
1,594,924 + 14447 mRNA_6079 0.36 +3.5
1,595,046 - 14447 mRNA_6079 0.41 -0.8
1,595,057 + 14447 mRNA_6079 0.41 +1.4
1,595,232 + 14447 mRNA_6079 0.49 +2.4
1,595,236 + 14447 mRNA_6079 0.49 -0.2
1,595,245 + 14447 mRNA_6079 0.50 -1.5
1,595,396 + 14447 mRNA_6079 0.56 +1.0
1,595,438 + 14447 mRNA_6079 0.58 -0.8
1,595,514 - 14447 mRNA_6079 0.61 +0.2
1,595,777 - 14447 mRNA_6079 0.73 +0.0
1,595,790 - 14447 mRNA_6079 0.73 +0.5
1,595,829 + 14447 mRNA_6079 0.75 +1.8
1,595,834 - 14447 mRNA_6079 0.75 -0.0
1,595,997 + 14447 mRNA_6079 0.82 +0.4
1,596,117 - 14447 mRNA_6079 0.88 +2.2
1,596,182 + -0.7
1,596,201 + +0.2
1,596,240 - +0.4
1,596,245 + +0.1
1,596,374 + +0.2
1,596,377 - +1.9
1,596,430 + +0.9
1,596,490 - +0.5
1,596,536 + +0.1
1,596,538 + +0.8
1,596,678 + +1.5
1,596,685 + +2.6
1,596,693 + +0.4

Or see this region's nucleotide sequence