Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6174

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14541 and 14542 are separated by 587 nucleotides14542 and 14543 are separated by 261 nucleotides mRNA_6173: 14541 - K00698 CHS1 chitin synthase, at 172,279 to 176,176 14541 mRNA_6174: 14542 - BLAST Glycoside hydrolase [Aureobasidium pullulans], at 176,764 to 178,095 14542 mRNA_6175: 14543 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 178,357 to 180,910 14543

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
175,805 + -0.5
175,870 + -0.7
175,941 + -0.3
175,958 - -0.2
176,086 + +1.4
176,107 + -0.6
176,243 + -0.2
176,244 - -0.8
176,249 + +0.9
176,253 - +0.4
176,267 + +0.7
176,448 + -0.0
176,541 - +0.6
176,545 - +1.8
176,553 - -0.7
176,560 + -0.3
176,561 + +0.7
176,563 + +0.4
176,641 - +0.4
176,642 + -0.2
176,645 - -0.2
176,768 - +0.8
176,780 + -1.1
176,932 - 14542 mRNA_6174 0.13 +0.3
176,938 + 14542 mRNA_6174 0.13 +0.9
176,938 + 14542 mRNA_6174 0.13 +1.8
177,065 - 14542 mRNA_6174 0.23 -1.0
177,249 + 14542 mRNA_6174 0.36 +1.1
177,264 + 14542 mRNA_6174 0.38 -0.9
177,712 + 14542 mRNA_6174 0.71 +2.3
178,108 - +1.0
178,194 + -0.9
178,223 + -0.7
178,250 + +0.9
178,526 + +0.9
178,918 + 14543 mRNA_6175 0.22 +1.5

Or see this region's nucleotide sequence