Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6260

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14627 and 14628 are separated by 463 nucleotides mRNA_6259: 14627 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 374,998 to 377,098 14627 mRNA_6260: 14628 - HMMPfam-Meiosis protein SPO22/ZIP4 like-PF08631, at 377,562 to 381,779 14628

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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377,019 - -0.4
377,463 - +0.9
377,929 - +1.2
378,598 - 14628 mRNA_6260 0.25 -1.3
378,739 - 14628 mRNA_6260 0.28 +1.0
378,758 - 14628 mRNA_6260 0.28 +0.5
378,900 + 14628 mRNA_6260 0.32 +0.9
379,070 + 14628 mRNA_6260 0.36 +1.5
379,649 - 14628 mRNA_6260 0.49 -0.1
379,743 - 14628 mRNA_6260 0.52 -0.2
379,748 + 14628 mRNA_6260 0.52 -0.3
380,066 - 14628 mRNA_6260 0.59 +0.5
380,082 - 14628 mRNA_6260 0.60 +0.5
380,660 + 14628 mRNA_6260 0.73 +1.3
380,821 - 14628 mRNA_6260 0.77 +1.0
380,943 - 14628 mRNA_6260 0.80 -1.4
380,964 - 14628 mRNA_6260 0.81 +0.3
381,410 - +1.2
381,534 - +0.1
381,559 + +0.6
381,687 - +0.1
381,740 - +0.3
381,847 + -0.8
381,855 - -0.4
381,867 + +1.1
381,867 + +0.3
381,874 + +0.8
381,882 - -0.5
381,896 + +1.0
381,899 + +2.0
381,936 - +0.7
381,941 + +1.0
381,941 + +1.2
381,942 - +1.9
381,943 - +1.4
381,943 - -0.5
381,946 + +0.2
381,946 + +0.5
381,948 + -0.6
381,948 - +0.8
381,964 - +1.0
381,979 - +0.8
381,981 + -0.9
381,993 + +0.8
382,008 - +0.1
382,089 + -0.6
382,089 + +0.4
382,104 + +1.3
382,110 - +0.1
382,132 + +1.0
382,143 - -1.0
382,189 - -0.5
382,195 - +0.2
382,212 + +0.2
382,220 + -0.1
382,238 - -0.2
382,240 - +0.4
382,249 + +1.4
382,254 - +0.5
382,264 - +0.1
382,289 - -0.6
382,293 - +0.7
382,307 + +0.1
382,324 + -0.1
382,332 + +1.6
382,340 + -0.4
382,345 + +0.1
382,349 - -2.0
382,360 + -0.6
382,363 + -0.2
382,365 + +0.6
382,369 + -0.8
382,370 - +1.8
382,370 - +0.9
382,375 + -1.4
382,381 + +0.9
382,418 - +0.7
382,423 + +0.6
382,433 + +0.7
382,434 - +0.7
382,436 + +0.1
382,436 - -0.6
382,436 - +2.1
382,437 - +0.3
382,448 - -1.6
382,449 + -0.4
382,451 + -0.4
382,471 - -0.1
382,503 + -0.5
382,516 + +1.1
382,529 - +0.2
382,531 + +0.3
382,531 + +0.0
382,535 + +0.8
382,542 + -0.0
382,543 - +0.6
382,546 - +0.1
382,549 - +0.2
382,550 - +0.9
382,556 + -0.3
382,566 - -0.4
382,570 - +1.1
382,571 - +1.0
382,573 - +0.5
382,575 - +1.5
382,583 - +0.6
382,583 - +0.6
382,586 + +0.2
382,586 + -0.9
382,587 + +0.2
382,588 - +0.5
382,588 - -0.1
382,590 - -0.2
382,592 - +0.5
382,594 + +0.6
382,603 + -0.3
382,652 - +1.9
382,663 - +0.3
382,691 - +1.3
382,695 + +0.6
382,700 + -0.3
382,707 - +1.6
382,713 - +1.5
382,724 + +0.8
382,726 + +0.3
382,732 + +1.0

Or see this region's nucleotide sequence