Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6271

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14638 and 14639 are separated by 0 nucleotides mRNA_6270: 14638 - KOG2645 Type I phosphodiesterase/nucleotide pyrophosphatase, at 407,745 to 410,533 14638 mRNA_6271: 14639 - Hypothetical Protein, at 410,534 to 411,923 14639

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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409,955 - 14638 mRNA_6270 0.79 -1.2
410,165 - 14638 mRNA_6270 0.87 -0.7
410,174 + 14638 mRNA_6270 0.87 +0.4
410,301 - +1.1
410,447 - +2.5
410,471 + -0.2
410,476 - +1.2
410,572 + +2.3
410,592 - +0.0
410,599 + -0.4
410,601 + +1.4
410,606 + +0.2
410,607 + -0.6
410,617 - -1.4
410,765 - 14639 mRNA_6271 0.17 +0.3
410,770 - 14639 mRNA_6271 0.17 +0.4
410,781 + 14639 mRNA_6271 0.18 -2.0
410,781 - 14639 mRNA_6271 0.18 +0.3
410,789 + 14639 mRNA_6271 0.18 +0.3
410,792 + 14639 mRNA_6271 0.19 +0.8
410,792 - 14639 mRNA_6271 0.19 -0.7
410,797 - 14639 mRNA_6271 0.19 -0.3
410,816 + 14639 mRNA_6271 0.20 +0.8
410,925 - 14639 mRNA_6271 0.28 +0.0
410,928 + 14639 mRNA_6271 0.28 -0.3
411,080 + 14639 mRNA_6271 0.39 +1.0
411,095 - 14639 mRNA_6271 0.40 -0.2
411,106 + 14639 mRNA_6271 0.41 +0.5
411,190 + 14639 mRNA_6271 0.47 -0.5
411,233 - 14639 mRNA_6271 0.50 -0.7
411,253 - 14639 mRNA_6271 0.52 +0.4
411,254 + 14639 mRNA_6271 0.52 +0.5
411,398 - 14639 mRNA_6271 0.62 +0.4
411,522 - 14639 mRNA_6271 0.71 -2.3
411,527 - 14639 mRNA_6271 0.71 -0.3
412,013 - -1.0
412,013 + +0.1

Or see this region's nucleotide sequence