Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6311

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14678 and 14679 are separated by 94 nucleotides14679 and 14680 are separated by 466 nucleotides mRNA_6310: 14678 - Hypothetical Protein, at 504,163 to 504,987 14678 mRNA_6311: 14679 - K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7, at 505,082 to 507,881 14679 mRNA_6312: 14680 - K10754 RFC1 replication factor C subunit 1, at 508,348 to 511,991 14680

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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504,156 + +0.5
504,585 + 14678 mRNA_6310 0.51 +1.0
504,974 + +0.1
505,083 + +1.6
505,161 - +0.2
505,554 + 14679 mRNA_6311 0.17 +2.0
505,649 + 14679 mRNA_6311 0.20 +0.4
505,716 + 14679 mRNA_6311 0.23 -0.5
506,545 + 14679 mRNA_6311 0.52 +1.8
506,848 - 14679 mRNA_6311 0.63 +0.9
507,690 - +0.7
507,966 + +2.2
507,979 + -0.4
507,982 - +1.0
508,104 - +0.2

Or see this region's nucleotide sequence