Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6340

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14708 and 14709 are separated by 260 nucleotides mRNA_6340: 14708 - BLAST tryptophan--tRNA ligase [Puccinia sorghi], at 586,004 to 586,792 14708 mRNA_6341: 14709 - K01867 WARS, trpS tryptophanyl-tRNA synthetase, at 587,053 to 588,639 14709

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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585,092 + +3.0
585,107 - +2.4
585,239 - +0.6
585,406 + +0.1
585,537 - -1.0
585,706 - +3.3
585,827 + +0.3
585,828 - +0.8
585,833 - +1.1
586,129 - 14708 mRNA_6340 0.16 +0.3
586,275 - 14708 mRNA_6340 0.34 -1.6

Or see this region's nucleotide sequence