Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6357

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14724 and 14725 are separated by 308 nucleotides14725 and 14726 are separated by 482 nucleotides mRNA_6356: 14724 - K01477 alc, ALLC allantoicase, at 622,458 to 625,058 14724 mRNA_6357: 14725 - HMMPfam-Ribonuclease-III-like-PF14622,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF69065, at 625,367 to 626,592 14725 mRNA_6358: 14726 - KOG1674 Cyclin, at 627,075 to 629,360 14726

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
624,372 - 14724 mRNA_6356 0.74 -1.9
624,536 + 14724 mRNA_6356 0.80 -0.0
624,554 + 14724 mRNA_6356 0.81 +0.3
624,829 + -0.9
624,839 + +0.2
624,851 - +0.3
624,853 + -0.0
624,994 + -0.6
624,995 - -0.4
625,015 - -0.4
625,113 + +2.2
625,164 + +0.6
625,174 + +0.9
625,197 + -0.4
625,253 - +2.0
625,299 - +1.1
625,481 - +0.3
626,643 - +0.1
626,648 - +0.3
626,660 - -0.2
626,662 - -0.8
626,663 - +0.2
626,669 - +0.0
626,672 + +1.9
626,672 + +0.9
626,672 + +0.3
626,673 + -0.4
626,778 - +0.0
626,783 - +0.5
626,783 - +0.9
626,803 - +1.0
626,929 + +0.1
626,937 - +0.6
626,952 - -0.1
626,957 + +3.1
626,967 - -0.1
627,070 + +0.8
627,088 - +0.3
627,538 - 14726 mRNA_6358 0.20 +0.1
627,565 - 14726 mRNA_6358 0.21 +3.3

Or see this region's nucleotide sequence