Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6463

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14831 and 14832 are separated by 169 nucleotides mRNA_6463: 14831 - K10427 DCTN5 dynactin 5, at 844,164 to 845,248 14831 mRNA_6464: 14832 - KOG1609 Protein involved in mRNA turnover and stability, at 845,418 to 846,912 14832

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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843,218 + +0.7
843,355 + +2.0
843,514 + +1.8
843,515 + -1.0
843,515 + +0.4
843,523 - +0.4
843,534 - +0.2
843,539 - +1.7
843,670 + +0.3
843,685 + +0.8
843,685 + +0.6
843,754 - +0.9
843,773 + +1.1
843,815 + -0.0
843,815 + +0.7
843,838 - +1.9
845,077 - 14831 mRNA_6463 0.84 +0.3
845,228 - +0.8
845,342 + +0.3
845,344 + -0.6
845,496 + +0.4
845,506 - -0.4
845,511 + +0.6
845,660 - 14832 mRNA_6464 0.16 +1.2
845,662 + 14832 mRNA_6464 0.16 +0.3
845,796 + 14832 mRNA_6464 0.25 +0.6
846,116 + 14832 mRNA_6464 0.47 +0.9
846,203 - 14832 mRNA_6464 0.53 +0.6

Or see this region's nucleotide sequence