Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6470

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14837 and 14838 are separated by 396 nucleotides14838 and 14839 are separated by 355 nucleotides mRNA_6469: 14837 - K10625 UBR1 E3 ubiquitin-protein ligase UBR1, at 858,043 to 864,348 14837 mRNA_6470: 14838 - Hypothetical Protein, at 864,745 to 865,870 14838 mRNA_6471: 14839 - KOG0806 Carbon-nitrogen hydrolase, at 866,226 to 867,912 14839

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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863,932 - +1.2
863,938 - -0.0
864,093 - +0.2
864,093 - +2.0
864,182 + -0.5
864,385 - +0.8
864,401 + +0.8
864,685 + +0.1
864,793 + +0.3
864,842 + -0.1
864,869 - 14838 mRNA_6470 0.11 -0.6
864,977 + 14838 mRNA_6470 0.21 -1.0
864,979 + 14838 mRNA_6470 0.21 -0.6
864,986 - 14838 mRNA_6470 0.21 +0.5
865,031 + 14838 mRNA_6470 0.25 -0.4
865,139 + 14838 mRNA_6470 0.35 -2.0
865,170 + 14838 mRNA_6470 0.38 -0.3
865,302 - 14838 mRNA_6470 0.49 +0.4
865,573 - 14838 mRNA_6470 0.74 +0.5
865,664 + 14838 mRNA_6470 0.82 +1.6
865,695 + 14838 mRNA_6470 0.84 -1.6
865,760 + +0.1
865,873 + -0.3
866,120 - +0.6
866,129 - +0.0
866,143 - +0.0
866,179 - -0.7
866,273 - -0.6
866,341 + +1.3
866,343 - -0.7
866,344 + +0.5
866,431 + 14839 mRNA_6471 0.12 +0.3
866,438 - 14839 mRNA_6471 0.13 +1.0
866,438 - 14839 mRNA_6471 0.13 +0.3
866,469 + 14839 mRNA_6471 0.14 +0.1
866,608 + 14839 mRNA_6471 0.23 +2.4
866,752 - 14839 mRNA_6471 0.31 +0.1
866,769 + 14839 mRNA_6471 0.32 +0.2

Or see this region's nucleotide sequence