Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6474

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14841 and 14842 are separated by 392 nucleotides14842 and 14843 are separated by 211 nucleotides mRNA_6473: 14841 - HMMPfam-XPG domain containing-PF12813,SUPERFAMILY--SSF88723, at 869,282 to 871,336 14841 mRNA_6474: 14842 - HMMPfam-Vitamin-D-receptor interacting Mediator subunit 4-PF10018, at 871,729 to 872,994 14842 mRNA_6475: 14843 - KOG3442 Uncharacterized conserved protein, at 873,206 to 873,968 14843

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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871,068 - 14841 mRNA_6473 0.87 +0.9
871,069 + 14841 mRNA_6473 0.87 +1.1
871,165 - +1.2
871,284 - -0.2
871,836 - +0.8
871,982 - 14842 mRNA_6474 0.20 -0.9
872,003 - 14842 mRNA_6474 0.22 +0.8
872,833 - 14842 mRNA_6474 0.87 +0.7
873,150 + -0.8
873,165 - +0.1
873,169 - +0.4
873,188 + +1.3

Or see this region's nucleotide sequence