Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6548

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14915 and 14916 are separated by 800 nucleotides14916 and 14917 are separated by 994 nucleotides mRNA_6547: 14915 - KOG3040 Predicted sugar phosphatase (HAD superfamily), at 1,053,521 to 1,054,436 14915 mRNA_6548: 14916 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 1,055,237 to 1,061,964 14916 mRNA_6549: 14917 - KOG0605 NDR and related serine/threonine kinases, at 1,062,959 to 1,066,157 14917

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,054,493 + +1.1
1,054,661 + +1.4
1,054,788 + -0.0
1,054,793 - +0.4
1,054,798 - +0.4
1,054,807 + +1.6
1,054,814 + +0.4
1,054,816 - +0.6
1,054,820 + -0.0
1,054,822 + +0.4
1,054,825 + -0.3
1,054,828 + +0.8
1,054,828 + -0.1
1,054,833 + +0.1
1,054,840 + -0.8
1,054,874 - +0.1
1,054,892 - +0.1
1,054,899 + -0.5
1,054,982 - +0.7
1,054,999 - +0.2
1,055,026 + +1.2
1,055,026 - -0.2
1,055,149 - +0.6
1,055,179 + +0.7
1,055,441 + +0.2
1,055,742 + -0.0
1,056,073 + 14916 mRNA_6548 0.12 -0.5
1,056,150 + 14916 mRNA_6548 0.14 +2.0
1,056,225 + 14916 mRNA_6548 0.15 +0.6
1,056,722 + 14916 mRNA_6548 0.22 -0.0
1,056,839 + 14916 mRNA_6548 0.24 +1.9
1,056,929 + 14916 mRNA_6548 0.25 +2.0
1,056,982 + 14916 mRNA_6548 0.26 -0.4
1,057,356 + 14916 mRNA_6548 0.31 +0.6
1,057,410 + 14916 mRNA_6548 0.32 +0.3
1,057,491 + 14916 mRNA_6548 0.34 +0.4
1,058,062 - 14916 mRNA_6548 0.42 -1.2
1,058,090 + 14916 mRNA_6548 0.42 +0.2
1,058,524 - 14916 mRNA_6548 0.49 +1.8
1,058,867 + 14916 mRNA_6548 0.54 +2.0
1,058,943 - 14916 mRNA_6548 0.55 +1.7
1,059,059 + 14916 mRNA_6548 0.57 +0.1
1,059,224 + 14916 mRNA_6548 0.59 -0.3
1,059,390 + 14916 mRNA_6548 0.62 +0.8
1,059,690 - 14916 mRNA_6548 0.66 +1.4
1,059,856 + 14916 mRNA_6548 0.69 -0.2
1,059,989 - 14916 mRNA_6548 0.71 +0.1
1,060,161 - 14916 mRNA_6548 0.73 -0.1
1,060,242 - 14916 mRNA_6548 0.74 +0.4
1,060,252 - 14916 mRNA_6548 0.75 -1.2
1,060,265 + 14916 mRNA_6548 0.75 +0.8
1,060,294 - 14916 mRNA_6548 0.75 -0.6
1,060,602 + 14916 mRNA_6548 0.80 +0.3
1,060,834 - 14916 mRNA_6548 0.83 +1.6
1,061,010 - 14916 mRNA_6548 0.86 +1.4
1,061,122 + 14916 mRNA_6548 0.87 -1.2
1,061,761 + -0.0
1,062,022 - +0.3
1,062,097 - +2.1
1,062,161 - +0.1
1,062,172 + +1.1
1,062,602 + +2.1
1,062,730 + +0.7
1,062,878 - -0.1
1,062,890 - -0.7
1,062,926 - +1.9

Or see this region's nucleotide sequence