Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6636

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15003 and 15004 are separated by 187 nucleotides15004 and 15005 are separated by 210 nucleotides mRNA_6635: 15003 - HMMPfam-Peptidase family M48-PF01435, at 1,302,314 to 1,305,791 15003 mRNA_6636: 15004 - K14403 CPSF3, YSH1 cleavage and polyadenylation specificity factor subunit 3, at 1,305,979 to 1,309,273 15004 mRNA_6637: 15005 - K15711 SMARCA3, HLTF SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3, at 1,309,484 to 1,313,910 15005

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,305,056 - 15003 mRNA_6635 0.79 +1.1
1,305,376 + 15003 mRNA_6635 0.88 +0.7
1,305,645 - +1.0
1,305,650 + +0.4
1,305,651 + +0.3
1,305,797 + +0.3
1,305,828 + +0.2

Or see this region's nucleotide sequence