Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6640

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15007 and 15008 are separated by 671 nucleotides15008 and 15009 are separated by 651 nucleotides mRNA_6639: 15007 - K00362 nirB nitrite reductase (NADH) large subunit, at 1,317,697 to 1,321,815 15007 mRNA_6640: 15008 - K10534 NR nitrate reductase (NAD(P)H), at 1,322,487 to 1,325,707 15008 mRNA_6641: 15009 - K11863 ATXN3, MJD Ataxin-3, at 1,326,359 to 1,327,984 15009

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,321,515 + +0.3
1,321,765 + -0.0
1,322,117 - -0.9
1,322,488 - +0.7
1,322,543 - -0.2
1,322,657 + -1.4
1,322,658 - -0.5
1,322,782 - +0.7
1,322,797 + -0.1
1,322,814 + 15008 mRNA_6640 0.10 -1.8
1,322,819 - 15008 mRNA_6640 0.10 +0.1
1,322,958 - 15008 mRNA_6640 0.15 +0.0
1,323,104 - 15008 mRNA_6640 0.19 +0.3
1,323,144 - 15008 mRNA_6640 0.20 -0.2
1,323,256 - 15008 mRNA_6640 0.24 +1.4
1,323,366 + 15008 mRNA_6640 0.27 +0.8
1,323,403 - 15008 mRNA_6640 0.28 -0.4
1,323,406 + 15008 mRNA_6640 0.29 +0.7
1,323,469 - 15008 mRNA_6640 0.30 +0.4
1,323,564 + 15008 mRNA_6640 0.33 +1.3
1,323,586 + 15008 mRNA_6640 0.34 +0.6
1,323,849 - 15008 mRNA_6640 0.42 -1.1
1,323,920 + 15008 mRNA_6640 0.44 +0.9
1,324,261 - 15008 mRNA_6640 0.55 +0.5
1,324,492 + 15008 mRNA_6640 0.62 +0.9
1,324,584 - 15008 mRNA_6640 0.65 +0.7
1,324,912 + 15008 mRNA_6640 0.75 +0.6
1,325,085 - 15008 mRNA_6640 0.81 +2.0
1,325,090 + 15008 mRNA_6640 0.81 +0.3
1,325,172 + 15008 mRNA_6640 0.83 -0.3
1,325,177 + 15008 mRNA_6640 0.84 +0.4
1,325,193 - 15008 mRNA_6640 0.84 +0.5
1,325,380 - 15008 mRNA_6640 0.90 +0.8
1,325,445 + +0.9
1,325,469 - +0.2
1,325,606 - +1.6
1,325,636 - +0.3
1,325,652 - +0.4
1,325,918 - -0.4
1,325,920 + +1.0
1,325,939 + +0.4
1,325,949 - -0.2
1,326,098 + +0.8
1,326,119 - +0.7
1,326,227 - -0.7
1,326,255 + -0.8
1,326,518 - -2.5

Or see this region's nucleotide sequence